Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02106 ATGGCTACTTACTTTCACATTCTCTGCATTCTCTCTCTCACTCTCCTTTCTCTGACCCCATTATCCTCTTCATCCAACACCATTAAACTCTCCCTTTCTCCATTCTTCACAAACCAACCCTCCTCTTCATCTTCCGCTTCTCAACCTTTATTACAAGCCCTCAAATTTGCCGCCTCTGCTTCTCTCTCCAGGGCTCACCACCTCAAGAACCGCAAAAGTAGCGAATCTGTCACCACCCCAGTCTTCGCAAAGAGCTACGGCAGCTACTCCGTAGACCTCAGTTTCGGAACACCACCGCAGACATTCCCCTTCGTTCTCGACACTGGAAGCAGCCTCGTCTGGTTCCCCTGTTCCTCACGCTACCTCTGCTCCAATTGCAACTTCCCAAACATCGACCCTTCCAACATCCACACCTTCATTCCCAAGAACTCTTCAACTGCCAGATTCGTCGGCTGCACCAATCCCAAATGTGACTGGATTTTCGGTTCCGATCCTCAATCCCGTTGCCCCGGCTGCCAACCTGGATCCCCCAACTGCGCGCTCAACTGCCCTGCTTACATCATACAATACGGTTTGGGCTCAACCGCCGGTCTCCTGCTACTGGACAATCTCGATTTTCCCGGAAAAATTGTTACCGATTTTCTCGTTGGCTGCTCAATCCTCTCGGTCCGGCAACCCGCCGGGATTGCCGGATTTGGACGCGGGAAGGAGTCACTGCCGTCGCAGATGAACCTCAAGAGATTCTCTTACTGTCTGGTCTCTCACCGCTTCGACGACGCGCCGGTGAAAAGCGACCTCATCTTACACATTGGTTCCTCCGGCGGCTCCAAGACCGCCGGCGTCAGCTACACGCCGTTCCGTGCGAACCCCGCCGCGGCGAACAATTCGGCATTCGGGGAATACTACTACGTTACTCTCCGGAAGATCCTCGTCGGCGGGAAGAGGGTGAAGGCTCCTTATGCATTATTGGAGCCCGGTTTGGACGGGAACGGCGGCACCATCGTTGACTCAGGGTCAACGTTCACGTTCATGGAGAAGCCGGTGTTCGAGGTCGTAGCAAAGGAATTCGAGAAGCAGATGAAGAATTTCACGAGGGCGAAGGACGTGGAGGACCAATCAGGCTTAAGTCCTTGCTTCGATTTCAAGGGATCGAAGACAGTGCCGTTGCCGGAGCTCACCTTTCAGTTCAAGGGTGGCGCCAAAATGACGCTTCCCGTGGCCGATTATTTCTCCTTGGTTGGTCGTCCTGACGTGGCATGTCTTACAATTGTCACGGATGGCGGTGCGGCCGGCCCCGCTAGGGCCGGGGGACCGTCGATCATATTGGGGAACTACCAGCAGCAGAATTACTACGTTGAGTATGATTTGGAGAATCAGAGGTTTGGGTTTAGGCCTCAGAATTGCCAAAAGAGTGTTTAG 1419 0.5377 MATYFHILCILSLTLLSLTPLSSSSNTIKLSLSPFFTNQPSSSSSASQPLLQALKFAASASLSRAHHLKNRKSSESVTTPVFAKSYGSYSVDLSFGTPPQTFPFVLDTGSSLVWFPCSSRYLCSNCNFPNIDPSNIHTFIPKNSSTARFVGCTNPKCDWIFGSDPQSRCPGCQPGSPNCALNCPAYIIQYGLGSTAGLLLLDNLDFPGKIVTDFLVGCSILSVRQPAGIAGFGRGKESLPSQMNLKRFSYCLVSHRFDDAPVKSDLILHIGSSGGSKTAGVSYTPFRANPAAANNSAFGEYYYVTLRKILVGGKRVKAPYALLEPGLDGNGGTIVDSGSTFTFMEKPVFEVVAKEFEKQMKNFTRAKDVEDQSGLSPCFDFKGSKTVPLPELTFQFKGGAKMTLPVADYFSLVGRPDVACLTIVTDGGAAGPARAGGPSIILGNYQQQNYYVEYDLENQRFGFRPQNCQKSV 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02106 472 CDD pepsin_A_like_plant 89 468 IPR034161 -
Aip06g02106 472 Gene3D Acid Proteases 272 472 IPR021109 -
Aip06g02106 472 PANTHER BNACNNG47670D PROTEIN 7 468 - -
Aip06g02106 472 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 104 115 IPR001969 GO:0004190|GO:0006508
Aip06g02106 472 PANTHER OS07G0603500 PROTEIN-RELATED 7 468 - -
Aip06g02106 472 ProSiteProfiles Peptidase family A1 domain profile. 89 464 IPR033121 -
Aip06g02106 472 Pfam Xylanase inhibitor C-terminal 302 464 IPR032799 -
Aip06g02106 472 Gene3D Acid Proteases 69 260 IPR021109 -
Aip06g02106 472 Pfam Xylanase inhibitor N-terminal 89 255 IPR032861 -
Aip06g02106 472 PRINTS Pepsin (A1) aspartic protease family signature 95 115 IPR001461 GO:0004190|GO:0006508
Aip06g02106 472 PRINTS Pepsin (A1) aspartic protease family signature 333 344 IPR001461 GO:0004190|GO:0006508
Aip06g02106 472 PRINTS Pepsin (A1) aspartic protease family signature 440 455 IPR001461 GO:0004190|GO:0006508
Aip06g02106 472 SUPERFAMILY Acid proteases 84 468 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02106 Aip-Chr6 92869397 92871348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02106 71 470 Miscellaneous Gene Families AT1G44130 25.059 7.88e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02106 - - gmx:100805927 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02106 06 92869397 92871348 Aip06g02106 06 92869397 92871348 ECH
Aip06g02106 06 92869397 92871348 Aip02g03178 02 108565163 108566786 PCT