Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03178 ATGGCTTTTTCTCCATACAAAATTCTCTCTCTCATTTCTATCATCTTCACCATCTTCACTTCAATGGTATCATCATTGATAACCACACCAAACAATAACAACACCAGTACTATTACCATTCCCCTATCTCCATTATTATTCACAGACAACAAGCACAATAATAAGAACCACCCTAATTCTTCATTAGATCAATACCAATCCCTCAAACTCCATGCTTATGCTTCCATAACAAGAGCCCACCACCTCAAACACCATAAAGCCAAAAAAGGCTCATATCCCTCCATCATCAAAACCCAAGTTCAGCCTAAAAGCTATGGAGGGTACTCCATAGACCTTAAATTTGGAACACCACCACAAACATTCTCTTTTGTTTTGGACACAGGAAGCAGCCTTGTATGGCTACCATGTTCATCTCATTACCTATGTTCCAAATGTAACATAGACACTAACAAGATTTCAACATTCATTCCCAAGAAATCCTCCACTTCCAAGCTCATAGGATGCAAAAGCCCTAAATGTTCATGGATTTTCGGGCCCAACGTAGAATGTCAAAATTGCCAAGAAAGTAAACAAAATAATTGCTCGCAGATTTGTCCAGCCTATACAGTTCAGTATGGACTGGGCATAACTGCGGGCTTTCTCCACTTGGAGAATTTAAATCTCCCCAAAAAAATTGTACCTAATTTTCTTGTAGGATGTTCCGTTCTTTCCATGTACCAACCTGCAGGTATAGTCGGATTAGGACGTGGACCAGAGTCATTGCCACGTCAGATGAACCTCAAGAAATTTTCTTATTGTTTACTCCCTCACCGCTTCGACGACTCCCGAGAGGGGTCCGACCTCGTCTTGCATGGCGGTAGAACGGCCGGAAAAACCGCCGGCGTTAGTTACACGCCGTTCGAAAAAAATCCGGCAGGGGAAAACACCGCATTTGCGACCTACTATTACATTCCAATCCGGAAGGTAATTGTTGGTGTGAAACATGTTAAGATTCCGGCGAATCTTCTAGAACCGGATTCCGCCGGAAACGGCGGATCCATAGTGGATTCTGGAACCACGTTCACGTTCATGGACAAGCCAATTTTCGATGCGGTGGCGCGTGAGTTCGAGAACCAAGTGAATCTCACGAGGAATAGGGTGGTTGAGAAGCGTTCAGGGCTGAGTCCATGTTTCATTGTCGCTGCCGACAACAAAACGACGTCGTTTCCGGCTCTAACATTGCAATTCAGAGGCGGCGCCAAGATGATTCTCCCGCCAGAAAATTATTTTTCTTTTGTTGGAGCAAAGTCTGACGTGGCGTGTTTTACAATTGTTTCCGATGAAGGATTTGCGGCGACAGCGTCGGCGGCGCGTGGACCTGCGGTGATTTTGGGGAACTATCAGCAACAGAATTTCTACGTGGAATATGATTTGGAGAATGAGAAGTTTGGATTTCGGCGTCAAAATTGTAAACGCAGTGGTTAG 1464 0.444 MAFSPYKILSLISIIFTIFTSMVSSLITTPNNNNTSTITIPLSPLLFTDNKHNNKNHPNSSLDQYQSLKLHAYASITRAHHLKHHKAKKGSYPSIIKTQVQPKSYGGYSIDLKFGTPPQTFSFVLDTGSSLVWLPCSSHYLCSKCNIDTNKISTFIPKKSSTSKLIGCKSPKCSWIFGPNVECQNCQESKQNNCSQICPAYTVQYGLGITAGFLHLENLNLPKKIVPNFLVGCSVLSMYQPAGIVGLGRGPESLPRQMNLKKFSYCLLPHRFDDSREGSDLVLHGGRTAGKTAGVSYTPFEKNPAGENTAFATYYYIPIRKVIVGVKHVKIPANLLEPDSAGNGGSIVDSGTTFTFMDKPIFDAVAREFENQVNLTRNRVVEKRSGLSPCFIVAADNKTTSFPALTLQFRGGAKMILPPENYFSFVGAKSDVACFTIVSDEGFAATASAARGPAVILGNYQQQNFYVEYDLENEKFGFRRQNCKRSG 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03178 487 PANTHER OS07G0603500 PROTEIN-RELATED 14 483 - -
Aip02g03178 487 ProSiteProfiles Peptidase family A1 domain profile. 108 479 IPR033121 -
Aip02g03178 487 Gene3D Acid Proteases 92 281 IPR021109 -
Aip02g03178 487 SUPERFAMILY Acid proteases 104 483 IPR021109 -
Aip02g03178 487 CDD pepsin_A_like_plant 107 483 IPR034161 -
Aip02g03178 487 PANTHER BNACNNG47670D PROTEIN 14 483 - -
Aip02g03178 487 Pfam Xylanase inhibitor C-terminal 315 479 IPR032799 -
Aip02g03178 487 Pfam Xylanase inhibitor N-terminal 108 281 IPR032861 -
Aip02g03178 487 Gene3D Acid Proteases 286 486 IPR021109 -
Aip02g03178 487 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 123 134 IPR001969 GO:0004190|GO:0006508
Aip02g03178 487 PRINTS Pepsin (A1) aspartic protease family signature 114 134 IPR001461 GO:0004190|GO:0006508
Aip02g03178 487 PRINTS Pepsin (A1) aspartic protease family signature 346 357 IPR001461 GO:0004190|GO:0006508
Aip02g03178 487 PRINTS Pepsin (A1) aspartic protease family signature 455 470 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03178 Aip-Chr2 108565163 108566786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03178 106 485 Miscellaneous Gene Families AT1G44130 24.069 1.30e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03178 - - adu:107476162 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g03178 02 108565163 108566786 Aip02g03178 02 108565163 108566786 ECH
Aip06g02106 06 92869397 92871348 Aip02g03178 02 108565163 108566786 PCT