Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01858 ATGCGGAGTTTCGTCGCCGTGTTGCTGGCCTTAACTGCTGTGGTGACGGCGGTGCCGGCAACGGTGGTGCTTCCGGGGAGCTATCTTCCCCTGGAACGCACCATTCCCCTGAACCGTCGCATGGAGCCGGAGGCGCTGAGAGCTCGCGACAGAGCACGCCACGCTCGAATCTTGCAAGGCGCAACTGTTGCCGGCGTTGTCGACTTCTCAGTCCAAGGAACCTCCGATCCTTACTTCGTTGGGTACGGATTGTACTTTACAAAAGTGAAGATGGGTTCTCCTCCTAAGGAATTTAATGTCCAGATTGATACTGGGAGTGACATCTTGTGGGTTAATTGCAACAGATGCAGTAATTGTCCACAGTCTAGCGGGCTGGGGATTCAGCTCAATTTCTTTGATGCAGCCAGCTCATCCACTGCTGCACTGGTTTCCTGCTCGGACCCGATATGCACTTATGCGGTTCAAACTGCAACAAGTGAATGCTCCTCTCAGGTTAATCAGTGCAGCTACACCTTTCAGTATGGAGATGGAAGTGGTACAACTGGATATTATGTTTCCGATGCTATATATCTTGACACGATTGTGGGACAGTCTGTGCTTTCTAACTCATCATCTACCATCGTTTTTGGGTGTAGCACCTATCAATCTGGAGATTTGACTAAGACAGAAAAAGCAGTTGACGGAATTTTTGGATTTGGACCTGGTGCTCTATCTGTTATATCGCAGTTGTCATCAAAAGGCATGACCCCCAAAGTTTTCTCGCATTGCTTAAAAGGAGATGGCAATGGAGGAGGCATACTAGTTCTTGGTGAGATATTGGAGCCTGGCATTGTTTATACTCCACTTGTCCCATCACAGCCCCATTACAACTTAAATCTTCAGAGTATTGCTGTCAACGGACAGCTCCTCTCAATTGATCCAGCTGCATTTGGAACATCTAACAATCGGGGAACCATAGTTGACTCTGGTACAACATTGGCATACCTTATTCAAGAAGCTTATGATCCATTTGTCAATGCTATAACTACAACTGTGTCACAGTTTGCCAGACCCATTATTTCTAAAGGAAACCAGTGCTATCTGGTCCCAACCAGCATAGGTGATATATTTCCTTCAGTCAGTTTAAACTTTATCGGTGGAGCATCCATGGTTCTGAAACCAGAACAATACCTTATGCATTATGGTTTTCTTGATGGTGCTGCAATGTGGTGCATGGGTTTCCAGAAAGTGCAGGAGGGATTCACAATTTTAGGAGATCTTGTGCTGAAAGATAAGATTTTTGTATATGACTTGGCTAATGAGCGTATTGGATGGACAAACTATGACTGTTCCTTATCAGTAAACGTCTCAGTGGCTGCAACCAAGAGCAAAGATCAGTACATCAATGCAGGAACGCTGAGTGTCAGCAGCTCCCTCATAGGCCATGTATACAAGTTACTACCTGTAAGCATTGTGGTTCTCCTTGTCCACATGATAGTTTCCATGGTGTCCCCAATTTCGTGA 1503 0.4597 MRSFVAVLLALTAVVTAVPATVVLPGSYLPLERTIPLNRRMEPEALRARDRARHARILQGATVAGVVDFSVQGTSDPYFVGYGLYFTKVKMGSPPKEFNVQIDTGSDILWVNCNRCSNCPQSSGLGIQLNFFDAASSSTAALVSCSDPICTYAVQTATSECSSQVNQCSYTFQYGDGSGTTGYYVSDAIYLDTIVGQSVLSNSSSTIVFGCSTYQSGDLTKTEKAVDGIFGFGPGALSVISQLSSKGMTPKVFSHCLKGDGNGGGILVLGEILEPGIVYTPLVPSQPHYNLNLQSIAVNGQLLSIDPAAFGTSNNRGTIVDSGTTLAYLIQEAYDPFVNAITTTVSQFARPIISKGNQCYLVPTSIGDIFPSVSLNFIGGASMVLKPEQYLMHYGFLDGAAMWCMGFQKVQEGFTILGDLVLKDKIFVYDLANERIGWTNYDCSLSVNVSVAATKSKDQYINAGTLSVSSSLIGHVYKLLPVSIVVLLVHMIVSMVSPIS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01858 500 Pfam Xylanase inhibitor N-terminal 85 270 IPR032861 -
Aip06g01858 500 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Aip06g01858 500 PRINTS Pepsin (A1) aspartic protease family signature 318 329 IPR001461 GO:0004190|GO:0006508
Aip06g01858 500 PRINTS Pepsin (A1) aspartic protease family signature 415 430 IPR001461 GO:0004190|GO:0006508
Aip06g01858 500 CDD pepsin_A_like_plant 85 443 IPR034161 -
Aip06g01858 500 Gene3D Acid Proteases 272 449 IPR021109 -
Aip06g01858 500 Gene3D Acid Proteases 68 271 IPR021109 -
Aip06g01858 500 SUPERFAMILY Acid proteases 80 446 IPR021109 -
Aip06g01858 500 Pfam Xylanase inhibitor C-terminal 288 439 IPR032799 -
Aip06g01858 500 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 462 - -
Aip06g01858 500 PANTHER ASPARTYL PROTEASES 5 462 IPR001461 GO:0004190|GO:0006508
Aip06g01858 500 ProSiteProfiles Peptidase family A1 domain profile. 85 439 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01858 Aip-Chr6 57980924 57985707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01858 83 444 Miscellaneous Gene Families AT1G44130 28.125 2.53e-41 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01858 - - gmx:100804147 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01858 06 57980924 57985707 Aip06g01858 06 57980924 57985707 ECH
Aip06g01858 06 57980924 57985707 Aip02g03280 02 109581168 109584941 PCT