Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03280 ATGCGGTGTTCTCTTACAGCGCGGGTTTTCGTTCTGGCCACCGTGGTGGCGGCGGTGGTGGATGCCGGCGTATTGCTTCCCTTGGAACGCGCGGTTCCAACTACTGGCAGCAGGCGCGTGGATGTGGAGTATCTGAGGGCGCGTGACAGAGCGCGTCATGCTCGAATCCTGCGTGGTTCtggtggtggcggttatggtggtggtggcgtaGTGAAGATGGGAACACCTCCAAAAGAATTTAATGTGCAGATTGATACCGGAAGTGACATCTTGTGGGTTAGCTGCAATACTTGCAGCAATTGCCCTCAATCTAGTGGACTTGGGATTGAGCTCAATTACTTTGACACGGTTGGCTCATCCACGGCTGCGCTGGTTCCATGCTCAGACTCGATATGTGCTTCTGAGGTTCAAGGTGCAGCTGCTGAATGTTCTCAGGCTAACCAGTGCAGCTATACATTTCAGTATGGAGATGGAAGTGGAACGACAGGATACTATGTTTCTGATACAATGTATTTTGATATGATCCTGGGACAGTCTTCACTTGCTAACTCTTCAGCGACTGTTGTTTTTGGGTGTAGCAACTATTTGTCTGGAGAATTGACTAAATCAGATAAAGCAGTTGATGGAATTATTGGGTTTGGCCCTGGTCCTCTATCTGTTGTATCACAATTGTCTTCGCGTGGTATAACACCCAAAGTTTTCTCTCATTGTTTAAAAGGAGATGGCAATGGAGGAGGCATACTGGTTCTTGGTCATATTTTGGATCCAAATATAGTTTATACCCCACTGCTTCCATCACAACCTCATTACAACGTAAACCTCCAGGGCATTTCTGTCAATGGACAACCCCTCTCAATTAATGCAGATGTATTTGCAACATCTGCCAATCGAGGAACTATAGTGGACTCCGGTACAACATTGGCATATCTTATTCAAGAGGCTTATGATCCTCTTGTCAATGCAATTACTACAGCAGTGTCACAGTCTACAAATCCTTTTATTTCAAAAGGACTTCAGTGTTATCTTCTCTCAACCAGTATAAGTGATATATTTCCTCAAGTCAGCTTAAACTTTGAGGGTGGAGCATCAATGGTTTTAAAACCAGAACAGTACCTTATGCATAATGGTGTCATGGATGGTCAGTCATTGTGGTGCATCGGTTTCGAGAAAGTGCAGGAGGGAGTCTCAATTTTAGGAGATCTGGTTTTAAAAGATAAGGTAATCATCTATGACTTAGCACATCAACAAATTGGATGGGCCAACTATGACTGTTCCTCCCCTGTAAACGTTTCTGTGGCTACAAGCAAGGATGAGTACATCAATGCCAGACAAACGAGTGTCAGCGGTGCAGATATAGGCATCCTCTCCAAGTTACTACCTGTAAGCATTGTGGCTCTCTCTGTGCACATAGCAATTTTCGCTCCATTTTTGTAA 1434 0.4372 MRCSLTARVFVLATVVAAVVDAGVLLPLERAVPTTGSRRVDVEYLRARDRARHARILRGSGGGGYGGGGVVKMGTPPKEFNVQIDTGSDILWVSCNTCSNCPQSSGLGIELNYFDTVGSSTAALVPCSDSICASEVQGAAAECSQANQCSYTFQYGDGSGTTGYYVSDTMYFDMILGQSSLANSSATVVFGCSNYLSGELTKSDKAVDGIIGFGPGPLSVVSQLSSRGITPKVFSHCLKGDGNGGGILVLGHILDPNIVYTPLLPSQPHYNVNLQGISVNGQPLSINADVFATSANRGTIVDSGTTLAYLIQEAYDPLVNAITTAVSQSTNPFISKGLQCYLLSTSISDIFPQVSLNFEGGASMVLKPEQYLMHNGVMDGQSLWCIGFEKVQEGVSILGDLVLKDKVIIYDLAHQQIGWANYDCSSPVNVSVATSKDEYINARQTSVSGADIGILSKLLPVSIVALSVHIAIFAPFL 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03280 477 Pfam Xylanase inhibitor C-terminal 269 420 IPR032799 -
Aip02g03280 477 ProSiteProfiles Peptidase family A1 domain profile. 67 420 IPR033121 -
Aip02g03280 477 PANTHER ASPARTYL PROTEASES 10 442 IPR001461 GO:0004190|GO:0006508
Aip02g03280 477 Gene3D Acid Proteases 253 431 IPR021109 -
Aip02g03280 477 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 10 442 - -
Aip02g03280 477 CDD pepsin_A_like_plant 71 424 IPR034161 -
Aip02g03280 477 SUPERFAMILY Acid proteases 70 427 IPR021109 -
Aip02g03280 477 Gene3D Acid Proteases 69 252 IPR021109 -
Aip02g03280 477 Pfam Xylanase inhibitor N-terminal 71 252 IPR032861 -
Aip02g03280 477 PRINTS Pepsin (A1) aspartic protease family signature 299 310 IPR001461 GO:0004190|GO:0006508
Aip02g03280 477 PRINTS Pepsin (A1) aspartic protease family signature 73 93 IPR001461 GO:0004190|GO:0006508
Aip02g03280 477 PRINTS Pepsin (A1) aspartic protease family signature 396 411 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03280 Aip-Chr2 109581168 109584941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03280 70 426 Miscellaneous Gene Families AT1G44130 28.382 6.06e-40 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03280 - - gmx:100820394 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g03280 02 109581168 109584941 Aip02g03280 02 109581168 109584941 ECH
Aip06g01858 06 57980924 57985707 Aip02g03280 02 109581168 109584941 PCT