Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01834 ATGAGTTCATCCTCAGGCCAGAGCAGTGGCTATGATCTCTCTTTCAAGATCTTGTTGATTGGTGATTCTGGTGTTGGAAAAAGTAGCCTTCTTGTTAGCTTCATTTCCAACTCTGTTGAAGATCTTGCACCAACAATTGGTGTTGATTTTAAGATCAAGGTGTTGACAGTGGCTGGGAAGAGGTTAAAGCTTACAATTTGGGATACTGCTGGGCAGGAAAGGTTCAGGACTCTAACGAGTTCTTATTACAGAGGAGCGCAAGGAATCATTCTCGTTTACGATGTCACGAGGAGAGAAACCTTCACAAACTTATCGGAAGTGTGGTCTAAGGAATTGGAACTCTATTCAACTAATCAAGATTGTGTGAAGATACTAGTTGGAAACAAAGTTGACAGAGAGTCTGAAAGGGCTGTTAGCAGAGAAGAGGGTTTAGCTCTCGCCAAAGAGTTGGGGTGTTTGCTTCTCGAAAGTAGCGCTAAAACTCGAGAAAATGTGGAGCAGTGCTTTGAGGAACTTGCTCTAAAGATAATGGAAGCTCCTAGTCTTTTGGAAGAAGGATCAACAGCAGTTAAAAGAAATGTTTTAAAGCAGAAACAGGAACCCCAAGCATCACAAAATGGTGGTTGTTGCTCTTAA 636 0.4198 MSSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISNSVEDLAPTIGVDFKIKVLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSEVWSKELELYSTNQDCVKILVGNKVDRESERAVSREEGLALAKELGCLLLESSAKTRENVEQCFEELALKIMEAPSLLEEGSTAVKRNVLKQKQEPQASQNGGCCS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01834 211 PANTHER DRAB5-RELATED 1 211 - -
Aip06g01834 211 SMART rho_sub_3 17 180 IPR001806 GO:0003924|GO:0005525
Aip06g01834 211 PRINTS Transforming protein P21 ras signature 15 36 - -
Aip06g01834 211 PRINTS Transforming protein P21 ras signature 37 53 - -
Aip06g01834 211 PRINTS Transforming protein P21 ras signature 55 77 - -
Aip06g01834 211 PRINTS Transforming protein P21 ras signature 119 132 - -
Aip06g01834 211 PRINTS Transforming protein P21 ras signature 154 176 - -
Aip06g01834 211 TIGRFAM small_GTP: small GTP-binding protein domain 15 171 IPR005225 GO:0005525
Aip06g01834 211 ProSiteProfiles small GTPase Ras family profile. 6 211 IPR001806 GO:0003924|GO:0005525
Aip06g01834 211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 200 IPR027417 -
Aip06g01834 211 CDD Rab18 15 176 - -
Aip06g01834 211 SMART arf_sub_2 5 180 - -
Aip06g01834 211 Pfam Ras family 16 177 IPR001806 GO:0003924|GO:0005525
Aip06g01834 211 SMART rab_sub_5 15 179 - -
Aip06g01834 211 ProSiteProfiles small GTPase Rho family profile. 8 179 - -
Aip06g01834 211 SMART ran_sub_2 20 210 - -
Aip06g01834 211 ProSiteProfiles small GTPase Rab1 family profile. 10 210 - -
Aip06g01834 211 PANTHER SMALL MONOMERIC GTPASE-RELATED 1 211 - -
Aip06g01834 211 Gene3D - 8 210 IPR027417 -
Aip06g01834 211 ProSiteProfiles small GTPase Arf family profile. 8 177 - -
Aip06g01834 211 SMART ras_sub_4 12 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01834 Aip-Chr6 52210131 52213474 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01834 9 179 EF-hand Containing Proteins AT5G27540 29.480 1.11e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01834 K07910 - gmx:100799887 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01834 06 52210131 52213474 Aip06g01834 06 52210131 52213474 ECH
Aip06g01834 06 52210131 52213474 Aip02g03303 02 109774171 109775586 PCT