Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03303 ATGAGTTTATCTTCAGGTCAAATCAGTAGTAGCTATGATCTCTCATTCAAGATCTTGTTGATTGGTGATTCAGCTGTTGGAAAAAGTAGCTTACTTCTAAGCTTCATCTCTAACTCTACTGAAGAACTTGCCCCCACAATTGGTGTTGATTTTAAGATCAAACAGCTCGTAGTTGGTGGCAAGAGATTGAAACTAACAATTTGGGATACCGCTGGACAGGAAAGGTTTAGAACACTAACAAGTTCTTACTATAGAGGAGCTCAAGGGATCATTCTTGTTTATGATGTCACCAGGAGAGAAAGCTTTACAAATTTATCAGAAGTATGGTCCAAGGAAGTGGAACTCTATTCTACTAATCAGGATTGTGTGAAGTTACTAGTTGGAAATAAAGTTGACAGAGATTCTGAAAGGGCTGTGAGCAGAGAAGAGGGTTCAGCTCTTGCTAAAGAGTTGGGATGTTTGTTTTTTGAATGTAGTGCCAAGACTAGAGAAAATGTGGAAAGCTGTTTTGAGGAGCTTGCATTAAAGATAATGGATGCTCCTAGTCTTTTGGAAGAAGGATCAAGCACAGTAAAAAGGAACATTCTCAAGCAAAAACAGGAACCTCAAGCATACCAACAAAGTGGTGGTTGTTGCTCTTGA 642 0.391 MSLSSGQISSSYDLSFKILLIGDSAVGKSSLLLSFISNSTEELAPTIGVDFKIKQLVVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRESFTNLSEVWSKEVELYSTNQDCVKLLVGNKVDRDSERAVSREEGSALAKELGCLFFECSAKTRENVESCFEELALKIMDAPSLLEEGSSTVKRNILKQKQEPQAYQQSGGCCS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03303 213 PANTHER SMALL MONOMERIC GTPASE-RELATED 2 213 - -
Aip02g03303 213 ProSiteProfiles small GTPase Rab1 family profile. 11 212 - -
Aip02g03303 213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 203 IPR027417 -
Aip02g03303 213 SMART rab_sub_5 16 180 - -
Aip02g03303 213 ProSiteProfiles small GTPase Arf family profile. 9 178 - -
Aip02g03303 213 PANTHER DRAB5-RELATED 2 213 - -
Aip02g03303 213 ProSiteProfiles small GTPase Ras family profile. 9 213 IPR001806 GO:0003924|GO:0005525
Aip02g03303 213 CDD Rab18 16 177 - -
Aip02g03303 213 Pfam Ras family 17 178 IPR001806 GO:0003924|GO:0005525
Aip02g03303 213 PRINTS Transforming protein P21 ras signature 16 37 - -
Aip02g03303 213 PRINTS Transforming protein P21 ras signature 38 54 - -
Aip02g03303 213 PRINTS Transforming protein P21 ras signature 56 78 - -
Aip02g03303 213 PRINTS Transforming protein P21 ras signature 120 133 - -
Aip02g03303 213 PRINTS Transforming protein P21 ras signature 155 177 - -
Aip02g03303 213 SMART ran_sub_2 21 213 - -
Aip02g03303 213 SMART ras_sub_4 13 180 - -
Aip02g03303 213 Gene3D - 8 212 IPR027417 -
Aip02g03303 213 SMART arf_sub_2 1 181 - -
Aip02g03303 213 SMART rho_sub_3 18 180 IPR001806 GO:0003924|GO:0005525
Aip02g03303 213 TIGRFAM small_GTP: small GTP-binding protein domain 16 172 IPR005225 GO:0005525
Aip02g03303 213 ProSiteProfiles small GTPase Rho family profile. 9 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03303 Aip-Chr2 109774171 109775586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03303 15 191 EF-hand Containing Proteins AT5G27540 26.816 2.88e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03303 K07910 - gmx:100818801 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g03303 02 109774171 109775586 Aip02g03303 02 109774171 109775586 ECH
Aip06g01834 06 52210131 52213474 Aip02g03303 02 109774171 109775586 PCT