Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01735 ATGCTTCATGAACAAGCTGCACCTTTAGTTGCTTCTTGGTCTTCAAGTTTTGCTGCTCAGCATTTTCCTACCTCTGTTCTCTCGCAAGAGCAGCGTGATGAGTATAAGCCTCTGCTTCACTTGTATAAGGAAGATAAGAACTCTCAGGTTACATCAAATACAAGAAATGTGGATACGGGCTTGGTCCGCGATAATGATAGCAATGATAATGCTGATCAGTTAGTGCATCACTTTAGGCAGCAGTTGCAACTCTGGTCACATTTGCAGAATGTATTGAAATCCTCAACAGGGGAAACTGCTGCGGCTTCATCTCTGCAGCCCGAAAGAGTTGATTCAGATAGACCTGCAGATGGTTTGCAATTTGATGCAGTATCCCTCTCTAAGCAAGCTCTGTCGGCCGCAAAACAAGCAGCATTAGTGGCTGAAGAGATGAAAATGATTGAAGATGACGAAGATGATGATCCACTTCCTCTTGGTCTGGCTTCCACAAGCTTAGCTGACACTTCAATTGGAAAGAATAAAATTGTGCGGTCAAGAAGGCTTCTAGAAAGGAGATTGAAGCAAAGAAAAGTTTCAAAATCAAAATTTCTTGATGAAGAAAGTTATCTTGCAAGAAAATCAGACCTACAGGGAAGGCTACAAGTAGAAAAGAAGATAAAGGAAGGATTCGATCAAAATGATCCCCTGCGCTTGTTCTTGTGGGGTCCTGAGACAAAGAAACTTTTGACCTCTGAAGAAGAGTCTCAATTGTTTGTTCAGCTACAGGATTTTCTGAGATTAGAAGAAGTAAAGATCAGGCTCCAATCTCAATTTGGACGGGAACCAACTTTGATTGAATGGGCTGAAGGTGTGGGTCTTAGCTGCCATGCCCTGCAGACACAGATCCATCATGGTAACATAATCAGAGGAAAGATAATTAATGCCAATTTACGGATGGTTGTTCATATTGCTAAACAGTATCAGGGTCGTGGTCTCAGTCTTCAGGACTTATTGCAGGAGGGAAGTATGGGACTTATGAAGAGTGTTGAAAGGTTTAAACCTCGAGTTGGTTGCCGGTTTGGTACCTATGCATACTGGTGGATAAGGCAAACAATTAGAAAGGCCATATTTCTACATTCCAGGTCAATCCGTCTGCCGGAGAGTTTATATACCCTTTTGGGCAAGGTCATGGAAGCAAAGAAATTATTCATTCAAGAAGGAAATCTTCACCCCAGTAAAGAAGAATTAGCAGAAAGGGTAGGAATTACCGTAGAAAAGTTTGAAAAGTTGTTATTTTCTGCAAGAATACCAATATCAATGCAGCAACCTGTGTGGGCAGACCAAGATACAACTTACCAGGAAATTACTGCAGATAGTGCAATTGAGATCCCAGGCTTGAGTGTCGAAAAAGAGCTTATGAGGAGGCACGTGCGCAACCTCCTAAGCATCTTAAGCCCAAAGGAGAAGAGGATAGTCAGTCTAAGATTTGGTATCGAGGATGGCCGCGAGAAATCTCTGCAAGAAATTGGAAACGTACTTGGTTTGACAAAGGAGAGGGTCCGACAGTTGGAGAGCCGAGCACTGAAGAAGCTCAAGCAGTGCCTTGAGAGCGAAGGACTTCATGCATATATGGACTTGATTGTATAG 1626 0.4268 MLHEQAAPLVASWSSSFAAQHFPTSVLSQEQRDEYKPLLHLYKEDKNSQVTSNTRNVDTGLVRDNDSNDNADQLVHHFRQQLQLWSHLQNVLKSSTGETAAASSLQPERVDSDRPADGLQFDAVSLSKQALSAAKQAALVAEEMKMIEDDEDDDPLPLGLASTSLADTSIGKNKIVRSRRLLERRLKQRKVSKSKFLDEESYLARKSDLQGRLQVEKKIKEGFDQNDPLRLFLWGPETKKLLTSEEESQLFVQLQDFLRLEEVKIRLQSQFGREPTLIEWAEGVGLSCHALQTQIHHGNIIRGKIINANLRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVERFKPRVGCRFGTYAYWWIRQTIRKAIFLHSRSIRLPESLYTLLGKVMEAKKLFIQEGNLHPSKEELAERVGITVEKFEKLLFSARIPISMQQPVWADQDTTYQEITADSAIEIPGLSVEKELMRRHVRNLLSILSPKEKRIVSLRFGIEDGREKSLQEIGNVLGLTKERVRQLESRALKKLKQCLESEGLHAYMDLIV 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01735 541 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 302 528 IPR014284 GO:0003700|GO:0006352|GO:0006355
Aip06g01735 541 PRINTS Major sigma-70 factor signature 477 489 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip06g01735 541 PRINTS Major sigma-70 factor signature 513 524 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip06g01735 541 PRINTS Major sigma-70 factor signature 498 513 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip06g01735 541 PRINTS Major sigma-70 factor signature 329 342 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip06g01735 541 PRINTS Major sigma-70 factor signature 353 361 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip06g01735 541 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 225 374 IPR013325 GO:0003700|GO:0006352|GO:0006355
Aip06g01735 541 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 2 541 - -
Aip06g01735 541 Pfam Sigma-70, region 4 473 526 IPR007630 GO:0003700|GO:0006352|GO:0006355
Aip06g01735 541 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 2 541 - -
Aip06g01735 541 Pfam Sigma-70 region 3 386 455 IPR007624 GO:0003700|GO:0006352|GO:0006355
Aip06g01735 541 ProSitePatterns Sigma-70 factors family signature 1. 329 342 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip06g01735 541 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 378 451 IPR013324 -
Aip06g01735 541 Pfam Sigma-70 region 2 306 369 IPR007627 GO:0003700|GO:0006352|GO:0006355
Aip06g01735 541 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 436 537 IPR013324 -
Aip06g01735 541 ProSitePatterns Sigma-70 factors family signature 2. 498 524 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip06g01735 541 CDD Sigma70_r4 467 525 - -
Aip06g01735 541 Gene3D - 378 454 IPR036388 -
Aip06g01735 541 PIRSF Sigma_factor_SigC 2 541 IPR016262 -
Aip06g01735 541 Gene3D - 125 374 - -
Aip06g01735 541 Gene3D - 455 538 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01735 Aip-Chr6 38963909 38967790 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01735 - - aip:107648612 1006.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01735 06 38963909 38967790 Aip06g01735 06 38963909 38967790 ECH
Aip02g03338 02 110068934 110072466 Aip06g01735 06 38963909 38967790 PCT