Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03338 ATGGAATCTGTAACAAACATGTTTTGTTCCTCTTCACCTTTTCCTTCTAGAGCTTTTCATTGCAACAATTCACCTCCTTCTTCTCCTCCAGTTTTGACTCTCCGCGAACAGGTCGGCCTCACATTTTCCTCTTGTTCTTCTAGCATTTCAGCACAGCAATTTCCTACCTCGGTTCTTTTACAAGAGCCGCGTGATGAATATAAATCTCTTTTGCACATGTATAAGGACGAAAAGACGTCTCAGATGGATAGTGCCCTGGTTGATGAAGAGAATGACACTGCCACTGCCACTGCTGATCAATTAGTGCATGATTTTAGGAAGCAATTGCATGTTTGGTCTCATTTACAGAACATATTGAGTTCTTCGGGAATAGAAGAAATTGCTGCCTCTTTGACTACAGAACGTGTCGCTCTTGACTCTGAGAGGCTGGCAGATGACTTGCAATGTAATGCAGTTTCTCTTGCTATGAAAGCGTTGTCAGCATCAAAACAAGCGGCCTCAGTAGTTGAAGACTTGAAATCACTTAAAGCTGATGATGATGAATCCCTTCATTTTGGTTTGGATGTCCCTTCGCTTCGAAGCAACAAAACTGTGAGGTCAACACGACTTCTAGAGAGACGATCAAAACAAAGAAAAGCGCCAAAGTCTAGAGCTAAGGATGATGAAACTTACCTTCCAAGAAAGGATAATGCTCAAGGAAGACTACGCGTAGAAAAGAAAATAAATGCAGAACTGAACCAAAATGATGCCCTGCACATGTTCTTGTGGGGTCCTGACACAAAGCAACTTTTGACACTTGAAGAAGAGTCTCAGTTGATTTCTCAGATACAGGACTTAATGAGATTAGAAGAAGTGAAAACCAGGCTTCAGTCTCAGTTTGGGAGGGAACCAACTATTGTAGAATTGGCTGAGGGTACGGGACTTAGCTGCCGAACGCTGCAGATGCAGATTCATTGTGGTAACAGAAGCAGAGAAAAGCTGATACAAGCTAATTTACGCATGGTAGTTCATATTGCAAAAAATTATCTGGGTCGTGGCCTTAGCCTCCAGGACTTATTACAGGAGGGAAGTATGGGTCTAATGAGGAGTATTGAGAAGTTTAAACCACAAGTTGGCTGCCGTTTCAGTACTTATGCATACTGGTGGATAAGGCAATCAATCCGAAAAGCCATATTCAAACATTCCCGGACAATCCGTTTGCCCGAAAACATATATATCCTTTTAGGAAAGATATCTGAGGCAAAGAAACTATACATGCAAGAAGGAAATCTAGAACCAACCAAGGAAGAATTAGCATTGAGGGTAGGGATTACGCGAGAGAAAATCGACCATTTGCTATATGTTGCAAGAAATCCGGTTTCTATGCAGCAAACTGTCTGGGCAGACCAAGCTACAACTTACCAGGAAATTACAGCAGACACCACAATTGAGACCCCAAACACGACAGTTGAAAAACAACTAATGAGACGGCATGTGCTCAGCCTCCTGCGTAACTTACGCCCAAAGGAAAGGAAGATCATCCGCCTAAGATTTGGTATTGAGGATGGCCAACAGAAATCTTTATCAGAAATCGGAGAAATATTCGGTTTGTCTAAGGAGAGGGTCCGTCAGTTGGAGAGTCGAGCATTGTTCAAGCTTAGGCAGTGTCTGGTGAGTCAAGGTCATGATGTTTACTCAGACTTGCTTGTATAG 1692 0.4261 MESVTNMFCSSSPFPSRAFHCNNSPPSSPPVLTLREQVGLTFSSCSSSISAQQFPTSVLLQEPRDEYKSLLHMYKDEKTSQMDSALVDEENDTATATADQLVHDFRKQLHVWSHLQNILSSSGIEEIAASLTTERVALDSERLADDLQCNAVSLAMKALSASKQAASVVEDLKSLKADDDESLHFGLDVPSLRSNKTVRSTRLLERRSKQRKAPKSRAKDDETYLPRKDNAQGRLRVEKKINAELNQNDALHMFLWGPDTKQLLTLEEESQLISQIQDLMRLEEVKTRLQSQFGREPTIVELAEGTGLSCRTLQMQIHCGNRSREKLIQANLRMVVHIAKNYLGRGLSLQDLLQEGSMGLMRSIEKFKPQVGCRFSTYAYWWIRQSIRKAIFKHSRTIRLPENIYILLGKISEAKKLYMQEGNLEPTKEELALRVGITREKIDHLLYVARNPVSMQQTVWADQATTYQEITADTTIETPNTTVEKQLMRRHVLSLLRNLRPKERKIIRLRFGIEDGQQKSLSEIGEIFGLSKERVRQLESRALFKLRQCLVSQGHDVYSDLLV 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03338 563 Gene3D - 188 396 - -
Aip02g03338 563 PRINTS Major sigma-70 factor signature 351 364 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip02g03338 563 PRINTS Major sigma-70 factor signature 375 383 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip02g03338 563 PRINTS Major sigma-70 factor signature 499 511 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip02g03338 563 PRINTS Major sigma-70 factor signature 520 535 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip02g03338 563 PRINTS Major sigma-70 factor signature 535 546 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip02g03338 563 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 4 563 - -
Aip02g03338 563 Pfam Sigma-70 region 2 327 396 IPR007627 GO:0003700|GO:0006352|GO:0006355
Aip02g03338 563 Gene3D - 478 550 IPR036388 -
Aip02g03338 563 MobiDBLite consensus disorder prediction 214 230 - -
Aip02g03338 563 CDD Sigma70_r4 489 547 - -
Aip02g03338 563 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 247 397 IPR013325 GO:0003700|GO:0006352|GO:0006355
Aip02g03338 563 MobiDBLite consensus disorder prediction 205 230 - -
Aip02g03338 563 ProSitePatterns Sigma-70 factors family signature 2. 520 546 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip02g03338 563 ProSitePatterns Sigma-70 factors family signature 1. 351 364 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip02g03338 563 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 400 473 IPR013324 -
Aip02g03338 563 Coils Coil 228 248 - -
Aip02g03338 563 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 461 558 IPR013324 -
Aip02g03338 563 Pfam Sigma-70, region 4 496 548 IPR007630 GO:0003700|GO:0006352|GO:0006355
Aip02g03338 563 Pfam Sigma-70 region 3 408 480 IPR007624 GO:0003700|GO:0006352|GO:0006355
Aip02g03338 563 Gene3D - 400 477 IPR036388 -
Aip02g03338 563 PIRSF Sigma_factor_SigC 3 563 IPR016262 -
Aip02g03338 563 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 323 550 IPR014284 GO:0003700|GO:0006352|GO:0006355
Aip02g03338 563 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 4 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03338 Aip-Chr2 110068934 110072466 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03338 - - gmx:100778636 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g03338 02 110068934 110072466 Aip02g03338 02 110068934 110072466 ECH
Aip02g03338 02 110068934 110072466 Aip06g01735 06 38963909 38967790 PCT