Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01239 ATGGAAGAAGCAAAACCCAACAAGGCGGCCCTGCTCTCATTCCTGGCCTTCTTCCTCTCACTCTCCGCAGCTGCCGCAGCAGCAGCCACTTCTAACTTCCAAACACAAACACTAACCGTCAACACTCTCCCTCACCCACCCATCCTCTCATGGCCCGAGTCCGAATCCAAATCCATCTCCGATTTCGACCCAGCCGAATCCGAAGCGGAATCCACCGCCATCTTCTCCCTGCAACTCCACCACATAGACGCTCTTTCCACTAACACAACACCACACCAGCTCTTCAACCTAAGGCTCCAACGAGACGCCGCCAGGGTCCACGCCCTGACCTCCATTGCCGCAGCTACCAACCGGACCCGTGCCGGGCCCCGTTCTCCCAGATCCGTTCCGGGTTTCAGCAGCTCAGTCATCTCTGGTCTAGCTCAAGGAAGTGGCGAGTACTTCACGCGCCTCGGTGTTGGGACCCCAGCCAGGTACGTGTACATGGTGCTTGACACCGGAAGCGACGTCGTTTGGCTTCAGTGCGCGCCATGCAGAAAATGCTACCAAGAAGCCGATCCAGTTTTCGACCCATCTAAATCCCGCACCTTCGCGAAAATCCCCTGTGGCGCCCCTCTCTGCCGCCGCCTTGACTCTCCGGGATGCAACCGGAACAAGGTCTGCCAGTATCAGGTCTCCTACGGCGACGGTTCCTTCACATTCGGTGATTTCTCCACCGAAACGCTCACATTTCGAAGGAGGAGGGTTGCGCGCGTGGCACTCGGGTGTGGTCACGACAACGAGGGTTTATTCGTCGGTGCCGCTGGCCTCTTGGGCCTGGGTCGTGGAAGGTTATCATTCCCAGCTCAAACCGGACGCCGGTTCAACCAGAAATTCTCTTACTGCCTCGTTGACCGATCCGCTTCTTCCAAACCATCTTCAATCGTTTTTGGTGACGCTGCCGTTTCTCGAACCGCTCGGTTCACTCCGCTTCTCAAAAACCCTAAGCTTGACACCTTCTACTACGTTGAGCTTATAGGTATCAGCGTCGGCGGCACTGCCGTTCGCGGAGTCTCCGCCTCGCTCTTTCGGATCGACGCCACAGGGAACGGTGGCGTTATAATCGATTCGGGTACTTCAGTAACCCGCTTGACCCGACCCGCTTACATCGCCCTGAGGGATGCTTACCGTGCCGGAGCCTCTCATCTGAAGCGTGCGCCGGAGTTTTCGCTCTTCGACACGTGTTACGATCTGTCGGGGCAGACTTCGGTGCAGGTTCCGAAGGTGGTGCTGCACTTCCGAGGTGCTGACGTGTCGCTGCCGGCTTCGAACTACATGATCCCGGTGGACAACAGTGGCAGCTTCTGCTTTGCGTTCGCCGGAACGATGAGCGGGTTGTCCATTATTGGCAACATTCAGCAACAAGGGTTTCGGGTCGTGTACGACCTTGCGGGGTCTCGGGTCGGGTTCGCGGAGCGAGGGTGCGAGTGA 1470 0.5776 MEEAKPNKAALLSFLAFFLSLSAAAAAAATSNFQTQTLTVNTLPHPPILSWPESESKSISDFDPAESEAESTAIFSLQLHHIDALSTNTTPHQLFNLRLQRDAARVHALTSIAAATNRTRAGPRSPRSVPGFSSSVISGLAQGSGEYFTRLGVGTPARYVYMVLDTGSDVVWLQCAPCRKCYQEADPVFDPSKSRTFAKIPCGAPLCRRLDSPGCNRNKVCQYQVSYGDGSFTFGDFSTETLTFRRRRVARVALGCGHDNEGLFVGAAGLLGLGRGRLSFPAQTGRRFNQKFSYCLVDRSASSKPSSIVFGDAAVSRTARFTPLLKNPKLDTFYYVELIGISVGGTAVRGVSASLFRIDATGNGGVIIDSGTSVTRLTRPAYIALRDAYRAGASHLKRAPEFSLFDTCYDLSGQTSVQVPKVVLHFRGADVSLPASNYMIPVDNSGSFCFAFAGTMSGLSIIGNIQQQGFRVVYDLAGSRVGFAERGCE 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01239 489 Pfam Xylanase inhibitor C-terminal 334 484 IPR032799 -
Aip06g01239 489 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 34 489 - -
Aip06g01239 489 Gene3D Acid Proteases 310 489 IPR021109 -
Aip06g01239 489 ProSiteProfiles Peptidase family A1 domain profile. 147 484 IPR033121 -
Aip06g01239 489 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 366 377 IPR001969 GO:0004190|GO:0006508
Aip06g01239 489 PANTHER ASPARTYL PROTEASES 34 489 IPR001461 GO:0004190|GO:0006508
Aip06g01239 489 CDD cnd41_like 146 488 IPR033873 -
Aip06g01239 489 PRINTS Pepsin (A1) aspartic protease family signature 153 173 IPR001461 GO:0004190|GO:0006508
Aip06g01239 489 PRINTS Pepsin (A1) aspartic protease family signature 366 377 IPR001461 GO:0004190|GO:0006508
Aip06g01239 489 PRINTS Pepsin (A1) aspartic protease family signature 460 475 IPR001461 GO:0004190|GO:0006508
Aip06g01239 489 SUPERFAMILY Acid proteases 140 488 IPR021109 -
Aip06g01239 489 Pfam Xylanase inhibitor N-terminal 147 312 IPR032861 -
Aip06g01239 489 Gene3D Acid Proteases 132 309 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01239 Aip-Chr6 18381957 18384108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01239 137 489 Miscellaneous Gene Families AT1G77480 25.964 5.99e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01239 K22683 - gmx:100794269 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01239 06 18381957 18384108 Aip02g00346 02 4601436 4606958 PCT