LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip06g00536	ATGACAGGGGCAGTGATGGTGAGCAAGGGCGCTGGATGCGGTGGTGGTAGGAGAGCGTCGGAGCAAGACGACGACGAACAGAACCAGCTGTCTCCGGTGGCGGTTCTGTTGGCGGCGCTTAGGAAATCAATGGTGGCTTGCAGTGTAGACAGTCCCAAAGATGTGATATCGAATACCGTTCATCAAATGGAGATTGGATGGCCCACAAACGTTAAGCACGTTAGTCATGTCACCTTCGATCGCTTCAATGGCTTCCTTGGTCTCCCCGTTGAGTTAGAGGTTCATGTTCCCGCTCCTGTTCCCAGTGCTAGTGTTAGTGTTTTTGGTGTCTCAGCTGAATCAATGCAATGTTCTTATGATTCAAAAGGAAACAGTGTCCCAACTATTCTCTTGCTAATGCAGGAGCGACTATACTCACAGGAAGGCCTAAAGGCTGAAGGTATATTTAGGATAAACCCGGAAAACGGCGAAGAGGAGCTATTAAGGGACCAGCTGAATAGAGGCATTGTGCCGGAAGACATTGATGTTCATTGCTTGGCAGGGCTAATTAAAGCTTGGTTCCGAGAACTTCCTTCGGGGGTGCTCGATGGACTTTCCCCTGAGCAAGTTCTTCAGTGCAATACAGAAGAAGATGCTGTTGAGCTTGTGAAGCAGCTAAAGCCAACTGAATCAGCCTTGCTCAACTGGGCCATTGATCTCATGGCTGATGTTGTTGTAGAAGAGGAGTATAACAAAATGGATGCTAGAAATATAGCTATGGTTTTTGCTCCAAACATGACTCAGATGTCTGATCCATTAACTGCTCTGATGCATGCGGTCCAAGTGATGAATTTACTAAAGACCCTGATATTGAAGACACTTAGAGAACGCGAAGAAACAGCAACAGATGGTTATTCTCCCATGTCATTTCGCTCATCAGATTGCCAATCTGAGGATGAATATGACAGTCAGCAACTAACAGATACCAGCGGGGAATTGCGGGGAACAAAGTTAGATTATGACGATCATGATGATGATGCTAACTGCAGCCATAGCAGTGAAGGGGAAGAAAGGGAGGTCCAGTCTCTAAGCGAGATAGAGCATTGCTTCTTGAAGTGTTTGAATGAAAACACAGAAGAAGGATGCTCAGAACAAGAACCTCCTCCTGAAGGATCTTTGCTAGAAGAATTCTGTAGCCCCAAAAGTTGCTCTGGCTATAACAAGCAATCTGCTGTATCATTAACTAATATCAAACCTGGGAATTCGTGCTCAAGTCCCTCTTATGGAGACGATTCGAGTTCACCACTGACTGCGGAGGGGTCGAATGTCAACACAAGTAGCCCATCAACAGGAAGTACAGACACCAGTCATGTGGAGATAATAGATAAATTTGCAATATCTGAATCGTTGGGGCCACTGTTTTCATCTAGTTAA	1413	0.4579	MTGAVMVSKGAGCGGGRRASEQDDDEQNQLSPVAVLLAALRKSMVACSVDSPKDVISNTVHQMEIGWPTNVKHVSHVTFDRFNGFLGLPVELEVHVPAPVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQEGLKAEGIFRINPENGEEELLRDQLNRGIVPEDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLQCNTEEDAVELVKQLKPTESALLNWAIDLMADVVVEEEYNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLREREETATDGYSPMSFRSSDCQSEDEYDSQQLTDTSGELRGTKLDYDDHDDDANCSHSSEGEEREVQSLSEIEHCFLKCLNENTEEGCSEQEPPPEGSLLEEFCSPKSCSGYNKQSAVSLTNIKPGNSCSSPSYGDDSSSPLTAEGSNVNTSSPSTGSTDTSHVEIIDKFAISESLGPLFSSS	470

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip06g00536	470	Pfam	RhoGAP domain	127	261	IPR000198	GO:0007165
	Aip06g00536	470	SMART	RhoGAP_3	124	287	IPR000198	GO:0007165
	Aip06g00536	470	SUPERFAMILY	GTPase activation domain, GAP	106	284	IPR008936	GO:0007165
	Aip06g00536	470	SMART	PBD_5	65	99	IPR000095	-
	Aip06g00536	470	MobiDBLite	consensus disorder prediction	327	354	-	-
	Aip06g00536	470	ProSiteProfiles	Rho GTPase-activating proteins domain profile.	110	291	IPR000198	GO:0007165
	Aip06g00536	470	CDD	RhoGAP	127	277	-	-
	Aip06g00536	470	MobiDBLite	consensus disorder prediction	408	448	-	-
	Aip06g00536	470	CDD	CRIB	63	93	-	-
	Aip06g00536	470	Gene3D	Rho GTPase activation protein	98	294	IPR008936	GO:0007165
	Aip06g00536	470	PANTHER	MKIAA1688 PROTEIN	1	469	IPR044785	GO:0005096
	Aip06g00536	470	MobiDBLite	consensus disorder prediction	1	28	-	-
	Aip06g00536	470	Pfam	P21-Rho-binding domain	64	92	IPR000095	-
	Aip06g00536	470	MobiDBLite	consensus disorder prediction	298	325	-	-
	Aip06g00536	470	PANTHER	RHO GTPASE ACTIVATION PROTEIN-RELATED	1	469	-	-
	Aip06g00536	470	ProSiteProfiles	CRIB domain profile.	65	78	IPR000095	-
	Aip06g00536	470	MobiDBLite	consensus disorder prediction	293	354	-	-
	Aip06g00536	470	Gene3D	CRIB domain	61	96	IPR036936	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip06g00536	Aip-Chr6	6860125	6862308	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip06g00536	-		K20642	gmx:100812700	655.21

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip06g00536	06	6860125	6862308	Aip06g00536	06	6860125	6862308	ECH
	Aip06g00536	06	6860125	6862308	Aip02g02869	02	104946040	104947471	PCT