Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00253 ATGATGAAGCTCCTCTGCCGTCTCTGTTCGCACCTCCGGTGGTCAAAACGGCGCCGTTTCCGCAAATCGAACCGAAACAAAAGCACCCTAACCACCAGCACTTGTTCATCAGCATTGGTTCACCCAAACAAGAAACCGCAGAAACCAATCCGCGTAGCAACCTTCAACGCCGCACTCTTCTCCATGGCACCAGCAGTCCCCACCAACAACGACGAAGAACAAAACGCGCGCTGTGATCTCAAACCCAAAAGCATTCTCAAGCACTCTCCTCTTCACCCAATAACTTCGGTTGTTCCACCACCGGAACGTCAATCGAAGCTGAGAGTTTCCATCAACCTACCAGATAACGAGATTTCGCTTCTGAGAAGCAGACAATCGAGCTTCTCGGAGCACGAGAGAGAAGGAGGAGGATCTTCTTGGCGATGGAGAAGCGTGGTGATGAGACAGTGCAACAGCTTCTCCGGCGTGGAAGGGAATGATGTGTACGGAATAAAGAGCCGGAAGACGGTGCTGGAGGTTCTGAGGGAGTTGGACGCTGACGTTTTGGCTTTGCAGGATGTGAAGGCGGACGAACAAAACGACATGAAGCCATTGTCGGATTTGGCCAAAGCTTTGGGCATGAACTACGTCTTTGCTGATAGCTGGGCTCCTGAATACGGCAACGCCGTTTTGTCCAGGTGGCCCATCAAACGCTCCAACGTTCAGAAACTCTTCGACCACACCGATTTCAGGAATGTTCTGAAGGCCACCATCGATGTACCTGAAGCTGGTGAAATGAACTTTTACTGCACCCATCTTGATCATCTTGATGAGAATTGGAGGATGAAGCAGATTAATGCAATAATCCAGTCTAATAATGATGAGCCTCACATCTTAGCTGGAGGGCTTAACTCACTTGATGAATCAGATTACTCACAAGAAAGATGGACTGATATTGTTAAGTACTATGAAGAGATTGGAAAACCAACACCAAAGGTTGAAGTGATGAAATATCTAAAGAGTAAGCACTACACGGATGCTAAGGACTATTCAGGGGAATGTGAATCTGTAGTGATGATTGCCAAAGGACAAAGTGTGCAAGGGACATGTAAGTATGGAACAAGGGTAGATTACATATTATCCTCATCAGATTCAACATATAAGTTCGTAGCAGGGTCCTATCTTGTGCTTTCTTCCAAAGGGACTTCAGATCATCACATAGTCAAAGTTGATGTGGTTAAAGAAAATAATAGCATTCTAAACAGTAGTCCTCTTCAAGAAGAAAACAATAATGTAACAAAGAAGCAGCAGAGAATGAAAACACAGCCAAGTCCATCAACTTTTTTACTCAAAGAAGTCAACACCTTAGTAATTGATGCTATTGATTTAGAGAAACTTGACATTAACTCCAACATTAATGAGTCAAAGTCAAAGACTATGGACCATGATCAAGGCACATATAAAGATAGGTACATAGAACAGAGAGAACAATGTCCCAAACAAGATGGCAGAAGAGGAATCCATCATAGAGAAGGAATATGGTGCCTCTGTCTTCCTATGATGACTATGTTGACTACATCAATCAAATGGCAGAACATGGAAAACAACATCATGATCCTCCTCTTCTCTCTGTTGATCCCCTCCTCTGCTTCTTCTACAGGAACAAGCTCCATGAAGCCCAAATTGATCCCTTATTTTGATTCAACCCTTTCCCAAGCTGCATCCTTTATTGCTCACAGAGGCAGCACTGCAGTTCTTCACAGGTTCTTTCCTCCAAGGCCAGGGATAAACAAGATCCTTTGGTTTCTCTATGCTGACAATATCACAACTACTAAGTGCGGCTTCAAGGTTATGGCTGCATCTTCTTACTCTTTGCAGAGTGGTAAGGCCAAACCTCAACAACTTGCTGTCTATTCAAGCCCTCCACAAGTGTTTCTTGGATCTTTTGTTGAGCATCAAATGTATTGCCACCTTCTCTGCGGCCTAAGGAATCTCGAAGCAATCGATGCTATTCGAACCCCTTATGCTGTAGGATTGGTTAAGGCTTTTGGCCTTCTAGAGTCCAAATGGGAGCAGCTTTGTGATGACCTTGAATGTGGCTTTCCAAGTATTGAAAATTCAGATGTGGCAATGAGGGAACCTGTGATTAAAGCACTTGGAGGGCCTCAACCGGAATTGTCAAACAGAATAAGGTTGATCTGTGGAGGTAATAATGATAATTGGGGTGGTATTGTTTATAGATTGTGGCCAAATATTCGTTATATAAGGTGTGTTTGCACTGGAAGCATGATGCAGTATTATCCAAAGCTGAAGTATTATGCAGGAGAGGTACCTATTGTTGGAGGAGATTACTTTGCTTCTGAGTGCTGTGTTGGCATAAATTTAGACATAATGCAACCTCCTGAGACGACAAGATTCGTGATACTTCCAACGGCTGCATACTTTGAGTTTCTTCCATTTAACATGAATGAGGAGAGCAATGATGCTGCTGATGAAACAGTGGATCTTAGCAGGGTAGAGGTAGGGAAGATGTATGAAGTGGTTGTTACTACTTATAGAGGATTCTATCGCTATCGGTTAGGGGATGTAGTGAAAGTTGTTGGATTCTATAACAAATCTCCAGAAGTAGAATTTGTGATGAGAGCACCTAAAACTCATGCTGAGATTCTAACAGAGAAGGACTTGGTTTCAGCAATCGAAAACTTTCAACTTGCAGTAAGAGGTGCCATGATGAAAATAGAGATAGTTGAGTTTGCAAGTTTCTTGGACCAGGAATCACAGCCAAAGCAGTTGAAGGTGTTTGCAGAAGTTCAAGAGGAATCTGATTTCATGGAGGACAAACTAGAAGAGTCAACAATGATATTGAAAAGGTGTATTTCCTCACTTGAAAGTGGCTTTGGAGCTTTGTACAAGGTGGAGAAGGATAAGGGTCAAGTAGGGAACTTAGTGGTATTCATTCTAAGGCCTGGAGCATTTGATAAGTTATATGAAGTAGCCATTAGAAATGGAACACCAGCTAGTCAATATAAACCACCCAAGATTATAAGAAATCATGAAATTGTCACACTCTTGCAAAAATATAGTTTTGTGACATTGAATGATATTTAG 3087 0.4273 MMKLLCRLCSHLRWSKRRRFRKSNRNKSTLTTSTCSSALVHPNKKPQKPIRVATFNAALFSMAPAVPTNNDEEQNARCDLKPKSILKHSPLHPITSVVPPPERQSKLRVSINLPDNEISLLRSRQSSFSEHEREGGGSSWRWRSVVMRQCNSFSGVEGNDVYGIKSRKTVLEVLRELDADVLALQDVKADEQNDMKPLSDLAKALGMNYVFADSWAPEYGNAVLSRWPIKRSNVQKLFDHTDFRNVLKATIDVPEAGEMNFYCTHLDHLDENWRMKQINAIIQSNNDEPHILAGGLNSLDESDYSQERWTDIVKYYEEIGKPTPKVEVMKYLKSKHYTDAKDYSGECESVVMIAKGQSVQGTCKYGTRVDYILSSSDSTYKFVAGSYLVLSSKGTSDHHIVKVDVVKENNSILNSSPLQEENNNVTKKQQRMKTQPSPSTFLLKEVNTLVIDAIDLEKLDINSNINESKSKTMDHDQGTYKDRYIEQREQCPKQDGRRGIHHREGIWCLCLPMMTMLTTSIKWQNMENNIMILLFSLLIPSSASSTGTSSMKPKLIPYFDSTLSQAASFIAHRGSTAVLHRFFPPRPGINKILWFLYADNITTTKCGFKVMAASSYSLQSGKAKPQQLAVYSSPPQVFLGSFVEHQMYCHLLCGLRNLEAIDAIRTPYAVGLVKAFGLLESKWEQLCDDLECGFPSIENSDVAMREPVIKALGGPQPELSNRIRLICGGNNDNWGGIVYRLWPNIRYIRCVCTGSMMQYYPKLKYYAGEVPIVGGDYFASECCVGINLDIMQPPETTRFVILPTAAYFEFLPFNMNEESNDAADETVDLSRVEVGKMYEVVVTTYRGFYRYRLGDVVKVVGFYNKSPEVEFVMRAPKTHAEILTEKDLVSAIENFQLAVRGAMMKIEIVEFASFLDQESQPKQLKVFAEVQEESDFMEDKLEESTMILKRCISSLESGFGALYKVEKDKGQVGNLVVFILRPGAFDKLYEVAIRNGTPASQYKPPKIIRNHEIVTLLQKYSFVTLNDI 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00253 1028 Gene3D Endonuclease/exonuclease/phosphatase 152 409 IPR036691 -
Aip06g00253 1028 Coils Coil 174 194 - -
Aip06g00253 1028 Pfam GH3 auxin-responsive promoter 539 1011 IPR004993 -
Aip06g00253 1028 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 535 1021 IPR004993 -
Aip06g00253 1028 MobiDBLite consensus disorder prediction 415 436 - -
Aip06g00253 1028 Pfam Endonuclease/Exonuclease/phosphatase family 166 398 IPR005135 GO:0003824
Aip06g00253 1028 SUPERFAMILY DNase I-like 166 405 IPR036691 -
Aip06g00253 1028 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.6-RELATED 535 1021 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00253 Aip-Chr6 2972903 2979318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00253 545 1019 EF-hand Containing Proteins AT1G23160 31.967 1.31e-72 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00253 K14487 - gmx:100786829 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00253 06 2972903 2979318 Aip06g00253 06 2972903 2979318 ECH
Aip06g00253 06 2972903 2979318 Aip02g02855 02 104653245 104657672 PCT