Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00218 ATGTTGAATCACTTAAGCTCCGGCGGCCGCACCAATGGAGTCCGAGTCGTCGTCGCCGGCGACCGAGGCACCGGAAAATCCAGCCTCATCGCCGCCGTAGCCTCCGAGTCCTTCTCGGAGACCGTCCCGCCGGTGCTCCCTCTCACTGTCTTGCCGGCCGATTTCTACCCCGACAACGTCCCCATCACCGTCGTCGACACTTCTTCAAGCTTAGAGAAACAGGGGAAGCGCAATGAAGAATTGAAGCAGGCTGATGTGGTGGTTTTAACGTATGCTTGCAATGAGCCTTCGACCTTTTCGCGGTTGAGTTCTTACTGGTTGCCGGAACTGGAGAGGCTGGAGGTGAAGGTGCCTGTAGTTGTGGTTGGTTGCAAGCTAGATCTGCATGATGAAAGCCAGCAAGTGAGCTTAGAGCGCCTCATGAATCAGCTCCTACAACAGTTCAAGGAAATTGTAACCTGCATTGAATGCTCAGCAGTTACACTATACCAGGTCCCTGAAGTTTTTTATTTTGCCCAAAAAGCGGTACTACATCCAATAGATCCATTGTTTGATCAAGAAAGTCAAGCTTTAACAGATCGATGTGTTAGGGCATTGAGAAGAATATTTGTTCTTTGTGATCGTGACATGGATGATGCCCTCAGTGACACAGAACTAAATGAGTTCCAGGTTAGATGTTTTGATGCCCCATTGCAGCCATCTGAAATAAATGGGGTCAAAACTGTTGTACAACAGAATGTACCTGAAGGAGTCAACTCAAATGGTCTTACTTTTCCAGGATTTCTTTATGTCCATAGTATGTTCCTTAGGAAAGGGCGCCCAGAGACATTATGGGCTGTTCTAAGAAACTATGGATATGATAATGATTTAAAACTCAGGAATGATTCCCTTCCAGTTCCGTCTAAGAATGCTTCTGATCAGAGTGTGGAGCTAACAAATGAAGCTGTAGAATTTCTGAATGGTATCTTCCGATTATTGGACACAGATAAAGATCGAGCCTTACGGCCTGCTGAAGTTGATAAGCTATTTTGTACTGCTCCATCAAGTCCTTGGAATGATGCTCCATATAAGGATGCTGCTGAGAAAAATGACATGGGTTACATAACACTGAACGGATTTTTGTCCCAGTGGGCCCTCATGACATTGCTCGATCCACCATGTAGCGTGGCTAATTTGATTTACATTGGATATAGTGGCAATACAGCTGCAGCACTACGTGTTACTCGCAGAAGATCAGTCGATCGCAAGAAGCAAGCAACAGAAAGGAATGTATTCCAATGCTATGTTTTTGGTTCTAAAAATTCTGGGAAATCTGCTCTCTTGGATTCATTTTTGGGAAGGCCATTCTCAAATAATTATACTCCGACAACAGCTGAACAGTTTGCAGCAAATACCATTGAATTAATACGGGGAACCAAGAAAGTTCTTGTGCTGCGGGAGATTCCGGAAGGGGAAGTGCCGAAAGTTTTGTCAAATCAGGATTATTTGGCGGCATGTGATGTAGCTATCTTCGTGTATGACAGCTCAAATGAACATTCATGGAAGAAATCCAGAGATATGCTTGAGCAGGTTGCAAGACAAGGAGAACTCACTGGCTATAGAGTTCCATGCCTCCTCATTGCTGCCAAGGATGATTTAACCCCATATCCAAGGGCAGTACAAGATTCAGTTAAGGCGACTCAGGAATTAGGAATAGAGGCCCCTATTCACTTGAGTATGAAATTAGGTGATTCAAGCAATGTGTTCCATAGGATTGTTAGTGTTGCAGAACACCCTCATTTAAGCATTCCAGAAACAGAGATTGGGAGGAAAAGAAAGCAATTTCATCGGCTTCTTCAAAACACACTCATTTTTGCATCAGTTGGAACTGCTATGGCTGTTGTTGGTGTGGCAGCATTGCGCGCATATGCAGTGAAAAAGAAATCTTCTGGTTAG 1935 0.4465 MLNHLSSGGRTNGVRVVVAGDRGTGKSSLIAAVASESFSETVPPVLPLTVLPADFYPDNVPITVVDTSSSLEKQGKRNEELKQADVVVLTYACNEPSTFSRLSSYWLPELERLEVKVPVVVVGCKLDLHDESQQVSLERLMNQLLQQFKEIVTCIECSAVTLYQVPEVFYFAQKAVLHPIDPLFDQESQALTDRCVRALRRIFVLCDRDMDDALSDTELNEFQVRCFDAPLQPSEINGVKTVVQQNVPEGVNSNGLTFPGFLYVHSMFLRKGRPETLWAVLRNYGYDNDLKLRNDSLPVPSKNASDQSVELTNEAVEFLNGIFRLLDTDKDRALRPAEVDKLFCTAPSSPWNDAPYKDAAEKNDMGYITLNGFLSQWALMTLLDPPCSVANLIYIGYSGNTAAALRVTRRRSVDRKKQATERNVFQCYVFGSKNSGKSALLDSFLGRPFSNNYTPTTAEQFAANTIELIRGTKKVLVLREIPEGEVPKVLSNQDYLAACDVAIFVYDSSNEHSWKKSRDMLEQVARQGELTGYRVPCLLIAAKDDLTPYPRAVQDSVKATQELGIEAPIHLSMKLGDSSNVFHRIVSVAEHPHLSIPETEIGRKRKQFHRLLQNTLIFASVGTAMAVVGVAALRAYAVKKKSSG 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00218 644 PIRSF Miro 10 643 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Aip06g00218 644 ProSiteProfiles Miro domain profile. 422 591 IPR020860 GO:0003924|GO:0005525
Aip06g00218 644 SMART ras_sub_4 11 179 - -
Aip06g00218 644 ProSiteProfiles Miro domain profile. 11 178 IPR020860 GO:0003924|GO:0005525
Aip06g00218 644 SMART rab_sub_5 14 179 - -
Aip06g00218 644 Gene3D - 292 482 - -
Aip06g00218 644 ProSiteProfiles small GTPase Rab1 family profile. 420 639 - -
Aip06g00218 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 596 IPR027417 -
Aip06g00218 644 PANTHER RHO FAMILY GTPASE 6 491 IPR003578 GO:0005525|GO:0007264
Aip06g00218 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 211 IPR027417 -
Aip06g00218 644 Pfam EF hand associated 230 314 IPR013567 -
Aip06g00218 644 Gene3D - 186 290 - -
Aip06g00218 644 Pfam Ras family 15 176 IPR001806 GO:0003924|GO:0005525
Aip06g00218 644 Pfam Ras family 429 554 IPR001806 GO:0003924|GO:0005525
Aip06g00218 644 Pfam EF hand associated 351 418 IPR013566 -
Aip06g00218 644 SUPERFAMILY EF-hand 182 378 IPR011992 -
Aip06g00218 644 SMART rho_sub_3 16 179 IPR001806 GO:0003924|GO:0005525
Aip06g00218 644 PANTHER MITOCHONDRIAL RHO GTPASE 6 491 - -
Aip06g00218 644 ProSitePatterns EF-hand calcium-binding domain. 207 219 IPR018247 -
Aip06g00218 644 Gene3D - 490 589 IPR027417 -
Aip06g00218 644 CDD Miro2 421 600 - -
Aip06g00218 644 Gene3D - 10 181 IPR027417 -
Aip06g00218 644 PRINTS Transforming protein P21 ras signature 14 35 - -
Aip06g00218 644 PRINTS Transforming protein P21 ras signature 115 128 - -
Aip06g00218 644 PRINTS Transforming protein P21 ras signature 154 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00218 Aip-Chr6 2310516 2316609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00218 1 642 EF-hand Containing Proteins AT3G63150 60.903 0.0 821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00218 K07870 - gmx:100803790 1060.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00218 06 2310516 2316609 Aip02g02814 02 104108522 104114720 PCT