Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00134 ATGTCTGGGGAAGAATTTGATGGGCATGATGATATGGGAGGGTATGTGCCTGAGGACCCTGGTTTTCAACAAGATCATTCTGTTGAACTTGATGAGGGGAATGTGTTTGATAGCTCTGGTTTTCCTCAGCTGCATCAACTTGATGAACACCATGATCCAGGAAATTTTGCTGAGGATGCCAATCCTCCTGTGAATGATTTTGCTGGCTATGATGTTGGAGATTTTCCGGAAGACCCCAGTTCTCCACAAGAGGAGCATGTCATTGAAGAAAATCATGATGTAGGAGATGTAACTGAGAATTTTGGTCCTTCTGTGCCACAAGAAGGGCATGAGAATGATTCCCAAGGACATGAAATTAAGAAGTGGCCTGGGTGGCCTGGAGAGAATGTCTTCAGGATGTTGGTCCCGGTGCAAAAGGTTGGCAGTATTATTGGCCGGAAGGGTGAGTTTATTAAGAAAATCACAGAAGAAACTAAGGCGCGAATCAAAATTCTTGATGGTCCTCCTGGAACCATGGAAAGAGCTGTAATGGTTTCGGCAAAAGAAGAGCCAGATCGGACCATACCACCTGCAGTTGAGGGTTTGTTAAGGGTTCATAAACAAGTCATCAATCTTGACCATGACTCGGCAGACACATCAGGTGCTGGGCCCTCAATTATCACTAGGCTTCTAGTCGCAGATACTCAAGCAGGAAGTCTGATTGGGAAGCAGGGTTCCACCATAAAATCCATTCAAGATGGCTCTGGTTGCATTATACGTGTTCTTGGATCAGAAAACCTACCTGTGTTTGCTTTGAGAGACGATAGTGTTGTTGAAGTACAAGGTGAACCTGCTGGAGTTCATAAGGCAGTTGAACTTATTGCAGTTCATTTGCGTAAGTTCTTGGTTGACCGCAGCATAGTCGGAGTATTTGAAACAAAGGCAAATGTTCGAGTCAACCACAATGCACCCCCACGCCAACCTTGGGTTCCTCCTCCTCAAGGGTTTCCAGCTCCTGGTGGTGGTGGGCCTGCTTTTGCACCCCCTAGTCAGCAATATATGCCACCATCACATCCCTATGATAATTATTACCCAACAGCCGACATGCCTCCTATGGACAAACAATTCCATCAGGCTCCACTATCTGCTTATGGCAGGGATCCATCCGCTGGAATTCATCCACCAAGTGCACAACCACAACAGTCTGCTGCAACTAAGGTTACACAGCACATGCAAATTCCTCTATCATATGCAGATGCTGTTATTGGAGCATCAGGTGCAAATATCAGTTACATTCGTCGTGCTAGTGGAGCAAGTGTTACGGTTCAGGAGACAAGGGGAGTGCCAGGGGAGATGACTGTTGAAATAAGTGGGACTACATCAGAGATACAGGCAGCCCAACAGCTGGTTCAGAACTTCGTCGCTGAAGCTGCAAGTGCTGCCCAGGATCAAGTGGCAGGAGCAATTAGCCAAGGTTACGGTTCCTATCCAACTAATGCTCCAGCATATGCTTCTCCGCCCTCTAGCACTGCTGGCCATGTGCCTTCTTCCGAGTATGGCCCCATGTATGGTGGTGGCATTGTTGGTCTTGTCATGGTTTTCTGGCTGGAATAA 1593 0.4708 MSGEEFDGHDDMGGYVPEDPGFQQDHSVELDEGNVFDSSGFPQLHQLDEHHDPGNFAEDANPPVNDFAGYDVGDFPEDPSSPQEEHVIEENHDVGDVTENFGPSVPQEGHENDSQGHEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTMERAVMVSAKEEPDRTIPPAVEGLLRVHKQVINLDHDSADTSGAGPSIITRLLVADTQAGSLIGKQGSTIKSIQDGSGCIIRVLGSENLPVFALRDDSVVEVQGEPAGVHKAVELIAVHLRKFLVDRSIVGVFETKANVRVNHNAPPRQPWVPPPQGFPAPGGGGPAFAPPSQQYMPPSHPYDNYYPTADMPPMDKQFHQAPLSAYGRDPSAGIHPPSAQPQQSAATKVTQHMQIPLSYADAVIGASGANISYIRRASGASVTVQETRGVPGEMTVEISGTTSEIQAAQQLVQNFVAEAASAAQDQVAGAISQGYGSYPTNAPAYASPPSSTAGHVPSSEYGPMYGGGIVGLVMVFWLE 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00134 530 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 57 499 - -
Aip06g00134 530 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 390 470 IPR036612 GO:0003723
Aip06g00134 530 ProSiteProfiles Type-1 KH domain profile. 128 195 - -
Aip06g00134 530 CDD PCBP_like_KH 222 288 - -
Aip06g00134 530 Pfam KH domain 131 183 IPR004088 GO:0003723
Aip06g00134 530 Pfam KH domain 221 287 IPR004088 GO:0003723
Aip06g00134 530 Pfam KH domain 401 464 IPR004088 GO:0003723
Aip06g00134 530 ProSiteProfiles Type-1 KH domain profile. 399 463 - -
Aip06g00134 530 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 57 499 - -
Aip06g00134 530 SMART kh_6 398 468 IPR004087 GO:0003676
Aip06g00134 530 SMART kh_6 127 200 IPR004087 GO:0003676
Aip06g00134 530 SMART kh_6 217 292 IPR004087 GO:0003676
Aip06g00134 530 MobiDBLite consensus disorder prediction 1 122 - -
Aip06g00134 530 Gene3D K Homology domain, type 1 388 475 IPR036612 GO:0003723
Aip06g00134 530 CDD PCBP_like_KH 130 199 - -
Aip06g00134 530 ProSiteProfiles Type-1 KH domain profile. 218 287 - -
Aip06g00134 530 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 123 182 IPR036612 GO:0003723
Aip06g00134 530 CDD KH-I 401 464 - -
Aip06g00134 530 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 214 300 IPR036612 GO:0003723
Aip06g00134 530 MobiDBLite consensus disorder prediction 79 96 - -
Aip06g00134 530 Gene3D - 128 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00134 Aip-Chr6 1320196 1324255 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00134 K21444 - gmx:100799901 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00134 06 1320196 1324255 Aip02g00871 02 14092002 14097733 PCT