Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00871 ATGTCTGGGGAAGAATATGATGCACAAGATGCAGGCTATGTGCCTGAAAACCCTGAATTTCCGCAAAACCATTCCGATGAACATGATGAAGGAAATGTGATTGATGATGCGGGGTTTCCTCAACTGCAGCCTGATGAACATGACGATGCCAATTTGGATGAGGGAGCTAATCCTCCTGAAAATCAGTTTGATGGCCACGAAATTGAAGGTTTGCCCGAAGATACCGATGCTCCTCCACAAGAGAATGCTGAGGAGGAGGAGGAACATCATGATATTGGGGATGTTACTGGGAATTTCAATTCTCAGGAGAAACAGGGAGCACAGGATAATTCGAAAGGAAATGAAATAAAGAAGTGGCCTGGTTGGCCTGGAGAGAATGTTTTCCGGATGTTGATTCCTGTACAAAAGGTTGGCAGTATCATCGGCCGCAAGGGAGAGTTTATTAAGAAAATGACGGAAGAGACCAAAGCTCGCATTAAAATTCTTGATGGTCCGCCAGGAACCATGGAAAGAGCAGTAATGGTTTCTGCAAAAGAAGAGCCAGATCGCGCCATACCGCCTGCTGTGGAGGGTTTGTTAAGGGTTCATAAACAAGTTGTCAATGTGGACCACAATCCTCCAGATGCATCGGCCGCATCAAACCAAGTTGTTACGAGGCTTCTGGTGGCAGATACTCAAGCAGGAAGCTTGATCGGGAAGCAGGGTTCCACAGTAAAGTCCTTTCAAGATAACACTGGTTGCAATATACGTGTTCTTGGATCAGCTGAATACCTGCCTGTATTTGCTCTACGGGATGATAGTGTTGTTGAAATACAAGGGGAGTCTGCTGGGGTTCACAAGGCAGTTGAACTTATTGCACTTCATCTCCGTAAATTCCTGGTTGACCGCGGCATAGTTGGAGTGTTTGAAACACAGATGCAAAGGCCAGATGCTCGAGTTAACCAGAATGTGCCCCCACCTCAAGCTTGGGGTCCTCCACATCCACAAGGGTTCCCCACTCCTGGCAGCGGCGGACCTGCTTTTGCACCCAATCCTCAATATATGCCTCCTTCACATAACTACGATAATTACTACCCACCTCCTGATCTGCCTCCCGTAGATAAGCTCATTCCTCCACCTGCCTATGCAAGGGATACTTCTCAATCACAGCAGTCTGTTGCAAATAAGGTCACACAGCACATGCAAATTCCTCTAACCTATGCAGATGCAGTTATTGGAGCATCAGGATCAAATATCAGCTACATTCGCCGTGCTAGTGGCGCAAGTATTACAATTCAGGAGACCAGGGGTATTCCAGGGGAAATGACTGTTGAGATAAGTGGCACCGCGTCACAAATACAGGCAGCTCAACAACTGGTGCAGAATTTCATGGCTGAAGCGGCGAGTGCGGCACAAGATCATATGGGGGGGTCAATTAACCAAGGTTACAATTCCTATCCTACCAATGCTTCTGTTTATGCATCTCCACCTTCAAGTGCTGGAGCACATACAGGTCATGCACCTGCTGCTGATTATGGTTCGGTGTATGGAACCAATTATGGTTACTAA 1548 0.4703 MSGEEYDAQDAGYVPENPEFPQNHSDEHDEGNVIDDAGFPQLQPDEHDDANLDEGANPPENQFDGHEIEGLPEDTDAPPQENAEEEEEHHDIGDVTGNFNSQEKQGAQDNSKGNEIKKWPGWPGENVFRMLIPVQKVGSIIGRKGEFIKKMTEETKARIKILDGPPGTMERAVMVSAKEEPDRAIPPAVEGLLRVHKQVVNVDHNPPDASAASNQVVTRLLVADTQAGSLIGKQGSTVKSFQDNTGCNIRVLGSAEYLPVFALRDDSVVEIQGESAGVHKAVELIALHLRKFLVDRGIVGVFETQMQRPDARVNQNVPPPQAWGPPHPQGFPTPGSGGPAFAPNPQYMPPSHNYDNYYPPPDLPPVDKLIPPPAYARDTSQSQQSVANKVTQHMQIPLTYADAVIGASGSNISYIRRASGASITIQETRGIPGEMTVEISGTASQIQAAQQLVQNFMAEAASAAQDHMGGSINQGYNSYPTNASVYASPPSSAGAHTGHAPAADYGSVYGTNYGY 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00871 515 CDD PCBP_like_KH 127 196 - -
Aip02g00871 515 Gene3D - 125 293 - -
Aip02g00871 515 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 49 509 - -
Aip02g00871 515 ProSiteProfiles Type-1 KH domain profile. 125 192 - -
Aip02g00871 515 Coils Coil 446 466 - -
Aip02g00871 515 ProSiteProfiles Type-1 KH domain profile. 215 285 - -
Aip02g00871 515 MobiDBLite consensus disorder prediction 319 333 - -
Aip02g00871 515 CDD KH-I 391 454 - -
Aip02g00871 515 Gene3D K Homology domain, type 1 377 465 IPR036612 GO:0003723
Aip02g00871 515 ProSiteProfiles Type-1 KH domain profile. 389 453 - -
Aip02g00871 515 MobiDBLite consensus disorder prediction 1 120 - -
Aip02g00871 515 MobiDBLite consensus disorder prediction 95 109 - -
Aip02g00871 515 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 117 180 IPR036612 GO:0003723
Aip02g00871 515 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 205 296 IPR036612 GO:0003723
Aip02g00871 515 Pfam KH domain 391 454 IPR004088 GO:0003723
Aip02g00871 515 Pfam KH domain 128 180 IPR004088 GO:0003723
Aip02g00871 515 Pfam KH domain 218 286 IPR004088 GO:0003723
Aip02g00871 515 MobiDBLite consensus disorder prediction 354 371 - -
Aip02g00871 515 SMART kh_6 214 290 IPR004087 GO:0003676
Aip02g00871 515 SMART kh_6 388 458 IPR004087 GO:0003676
Aip02g00871 515 SMART kh_6 124 197 IPR004087 GO:0003676
Aip02g00871 515 MobiDBLite consensus disorder prediction 310 389 - -
Aip02g00871 515 CDD PCBP_like_KH 217 286 - -
Aip02g00871 515 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 49 509 - -
Aip02g00871 515 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 381 460 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00871 Aip-Chr2 14092002 14097733 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00871 K21444 - gmx:100818363 753.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00871 02 14092002 14097733 Aip02g00871 02 14092002 14097733 ECH
Aip06g00134 06 1320196 1324255 Aip02g00871 02 14092002 14097733 PCT