Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03938 ATGGCTTCAAAACCACCACCACTGTCCCTCCTCTTCATTGCTCTCTCCATGCTCTCTTCCACCACCACCAGCAGCAGCTCCGGCCCCGGTATCGCCATCTACTGGGGCCAAAACGGCAAAGAAGGCACCTTACAACAAGCATGCGCCACAAACAACTACAAAATCGTAATCCTCGCATTTCTTACCGTCTTTGGCAGTGGCCGAACTCCGAAATGGAACTTCGCCGGCCACTGCGGCGATTGGAGCCCCTGCACCAAACTAGCCCCACAAATCCACTACTGCCAGAGCCAAAACATCAAGGTGTTCCTCTCCCTCGGCGGCGGCATCGGACACTACTCTCTCTCCTCGCCGCAAGACGCGAGGGAAGTTGCGCTCTATCTTTTTGAAAGCTTCCTCAGTGGCCAACACGGACCACTGGGAAGCGTGGCATTAGATGGCATTGACTTTGACATCGAAGAAGGGTCAAATCTTTTCTACGATGACTTAGTCAAAGCCATCAATGCATTCTCCACAAAGGAGAAAAGAATTTACCTATCTGCGGCGCCGCAATGTCCGTACCCAGATCACTACCTCGATAAAGCAATCAAAACTGGATTATTTGATTATATTTGGGTTCAATTCTATAACAACCCTCCATGCCAATACTCAAATGGAAACCCTAAGAAACTTTTCGAGTATTGGGACACGTGGACATCGTCGGTTTTGCCGAATAACACTGTCCTTTTGGGGCTTCCGGCGGCGCCTCGTGCCGCCGGAAGTGGGTTCGTAGCTGCTGAGGTTGTGGCGGATGAGATTCTTCCGTACATAAGAAAAGGTTCAAACTATGGAGGGGTTATGCTTTGGAGCAGATACTATGATGTTCAAACCAACTTCAGTGAGAAGATTAAGGGTAGCTTGATGATGAGATCTGCGTTGAAGTTAGTGAAAGCAATTGGAGATGGAATATATGAAGGCCTGTTTTCCATTTTGAACCGTCGTTATGTGCCTAAATCTGCTTCACTTAGGGCTGATGTTTGA 1017 0.4877 MASKPPPLSLLFIALSMLSSTTTSSSSGPGIAIYWGQNGKEGTLQQACATNNYKIVILAFLTVFGSGRTPKWNFAGHCGDWSPCTKLAPQIHYCQSQNIKVFLSLGGGIGHYSLSSPQDAREVALYLFESFLSGQHGPLGSVALDGIDFDIEEGSNLFYDDLVKAINAFSTKEKRIYLSAAPQCPYPDHYLDKAIKTGLFDYIWVQFYNNPPCQYSNGNPKKLFEYWDTWTSSVLPNNTVLLGLPAAPRAAGSGFVAAEVVADEILPYIRKGSNYGGVMLWSRYYDVQTNFSEKIKGSLMMRSALKLVKAIGDGIYEGLFSILNRRYVPKSASLRADV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03938 338 PANTHER ACIDIC ENDOCHITINASE 10 298 - -
Aip05g03938 338 PANTHER ENDOCHITINASE 10 298 - -
Aip05g03938 338 Pfam Glycosyl hydrolases family 18 31 286 IPR001223 GO:0005975
Aip05g03938 338 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
Aip05g03938 338 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 29 302 IPR001223 GO:0005975
Aip05g03938 338 SUPERFAMILY (Trans)glycosidases 26 294 IPR017853 -
Aip05g03938 338 Gene3D Glycosidases 29 300 - -
Aip05g03938 338 CDD GH18_hevamine_XipI_class_III 29 297 IPR045321 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03938 Aip-Chr5 147603724 147605157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03938 10 299 Glycoside Hydrolase AT5G24090 49.829 3.55e-102 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03938 K01183 - gmx:547449 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03938 05 147603724 147605157 Aip09g03305 09 139450086 139451723 ECH
Aip05g03938 05 147603724 147605157 Aip05g03938 05 147603724 147605157 ECH
Aip05g03938 05 147603724 147605157 Aip09g03305 09 139450086 139451723 PCT