Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03799 ATGTCTGGGAGTTACAGAGATCTAGAAGCTGGTGGGGCTAACAAGAACAACATGGCACCGATACGGAATTCCAACAGGAATTACTACTATGCTGCTCCTACTACTTCTACTACTGCTTCTCATCTTTATCATTCAGAAACCACTTGGACATCCTGGCTTGTTCCTATGTTTGTTCTTGCCAATTCTGTTGTTTTCATTGTCGCTATGTACATCAATGATTGTCCCAACAAAAATTCTGGTATTCGGGTTCGGGGTCATTGTGTGGCTACATTTCTCGGTAGATTCTCCTTTCAGCCTCTCTCTGAGAATCCATTGTTTGGACCTTCTTCCATAACGTTGACTAAGATGGGAGCCCTTCAATGGGATAGTGTTGTTAATCATCATCAGGGATGGAGACTTATCACTTGCATTTGGTTACATGCCGGAGTTGTTCATTTGGCAGCAAACATGTTGAGCTTGGTCTTTATCGGCATTCGTCTCGAACAACAATTCGGGTTTGTGAGGATAGGAATCATTTACCTGTTGTCTGGATTTGGTGGGAGTGTGCTCTCGTCTCTATTTATTAGAAACAATATCTCTGTTGGTGCTTCTGGTGCTCTTTTTGGACTTCTAGGAGCAATGCTTTCGGAACTTATTACTAACTGGACTATTTATACCAACAAGGCTGCTGCATTACTCTCACTTTTGGTCATTATTGTCATCAATCTTGCCATTGGCATTTTGCCCCATGTTGATAATTTTGCTCACATTGGGGGATTCCTAACAGGATTTCTCCTTGGCTTTATCTTTCTTCCTCGTCCTCAATACGGTTGGCTAGAGCAGCAGCGTCTTCCTTCTGGTGTTCGCTTCAAGTCAAAATACAAGGCTTACCAATATGCTCTATGGCTTATCTCTCTTGTTCTATTGATTGTTGGGTTATTGATTGCTTTGGTGATGCTATTCCGGGGTGACAATGGCTATGATCATTGCCATTGGTGTCACTATCTAACATGTGTTCCAACTTCTAAATGGAAATGCAATGACAAGATAACAGTAAGGATACTCCAGCAGCCTCGAAGAAGAAATCCAAAGCTATTGAATATCCTGAAGCAAAAGCAACACACTGCGTTTCATTCCTTTTTCGATTCAAGTAGAACAGAAGTGGAGACTATGGAACAAGAAAGGGAGAGAAATGGGCGATTGTGTTGCCTGTGCAGTGGGAGGGCCGCCTTGAGAAGGCCGAAAACCCTCCAACAGTTATGCAGGGAGTGCTTCTTTCGGGTCTTTGAGGACGAGATTCACCAAGTCATTGTCTCCAATGGCCTCTTCACACGTGGGGAGCGTGTGGCAATCGGTGCTTCAGGCGGCAAAGACTCCACAGTCCTGGCCTATGTGCTAGCTAAGCTTAACCAAACCCATGACTATGGCCTCCATCTCTTCCTGCTCTCTGTTGATGAGGGCATCACCGGCTACCGTGATGACTCCCTTGAAACTGTTCACAGAAACCAAATTCAGTATGGACTGCCTCTCAAGGTTGTCTCTTACAAGGACCTCTATGGTTGGACCATGGATGAAATTGTTGCCACCATTGGTAAAAAGAATAATTGTACCTTCTGTGGTGTCTTCCGTCGGCAGGCCCTTGATCGTGGTGCTGCACTCTTGAAAGTAGATAAGCTCGTTACCGGTCATAATGCCGACGATATTGCAGAGACAGTTCTCTTGAATATACTTAGAGGAGATATTGCTAGATTGAGTAGATGCACTTCCATAACCACAGGTGAAGATGGGCCCATTCCCAGGTGCAAGCCTTTCAAGTATACATACGAGAAGGAGATCGTAATATATCCTTTTAGCATCTATTCTCCAAATGCTTATCGTGGTTTTGCCCGAGAGTTCATCAAAGATTTGGAAAGACTCAGACCTCGGGCGGTTCTCGACATCATTAGATCGGGTGAGAATTTCAGGATATCTACAACTGCAAAAATGCCAGAGCAAGGAACATGTGAACGGTGTGGTTATATTTCTAGCCAGAAATGGTGTAAAGCTTGTGTCCTTCTTGACGGATTGAATCGAGGTTTGCCTAAGCTTGGAATTGGACGAAGTCATGGTGTCATTGGTGCATCCGGGGACAGAAATGAAAGGAATGGTGGAAAGACCATTGAGAGTAAACAATGTGGAACTCTAGACTTCTAA 2172 0.4415 MSGSYRDLEAGGANKNNMAPIRNSNRNYYYAAPTTSTTASHLYHSETTWTSWLVPMFVLANSVVFIVAMYINDCPNKNSGIRVRGHCVATFLGRFSFQPLSENPLFGPSSITLTKMGALQWDSVVNHHQGWRLITCIWLHAGVVHLAANMLSLVFIGIRLEQQFGFVRIGIIYLLSGFGGSVLSSLFIRNNISVGASGALFGLLGAMLSELITNWTIYTNKAAALLSLLVIIVINLAIGILPHVDNFAHIGGFLTGFLLGFIFLPRPQYGWLEQQRLPSGVRFKSKYKAYQYALWLISLVLLIVGLLIALVMLFRGDNGYDHCHWCHYLTCVPTSKWKCNDKITVRILQQPRRRNPKLLNILKQKQHTAFHSFFDSSRTEVETMEQERERNGRLCCLCSGRAALRRPKTLQQLCRECFFRVFEDEIHQVIVSNGLFTRGERVAIGASGGKDSTVLAYVLAKLNQTHDYGLHLFLLSVDEGITGYRDDSLETVHRNQIQYGLPLKVVSYKDLYGWTMDEIVATIGKKNNCTFCGVFRRQALDRGAALLKVDKLVTGHNADDIAETVLLNILRGDIARLSRCTSITTGEDGPIPRCKPFKYTYEKEIVIYPFSIYSPNAYRGFAREFIKDLERLRPRAVLDIIRSGENFRISTTAKMPEQGTCERCGYISSQKWCKACVLLDGLNRGLPKLGIGRSHGVIGASGDRNERNGGKTIESKQCGTLDF 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03799 723 Pfam Rhomboid family 126 267 IPR022764 GO:0004252|GO:0016021
Aip05g03799 723 Pfam Zinc-ribbon 659 689 IPR032442 -
Aip05g03799 723 SUPERFAMILY Rhomboid-like 50 268 IPR035952 -
Aip05g03799 723 Gene3D HUPs 393 699 IPR014729 -
Aip05g03799 723 Gene3D - 47 266 IPR035952 -
Aip05g03799 723 PANTHER RHOMBOID-RELATED 28 341 IPR002610 GO:0004252|GO:0006508|GO:0016021
Aip05g03799 723 Hamap Cytoplasmic tRNA 2-thiolation protein 1 [CTU1]. 393 694 IPR000541 GO:0000049|GO:0002098|GO:0034227
Aip05g03799 723 PANTHER RHOMBOID-LIKE PROTEIN 3 28 341 - -
Aip05g03799 723 Pfam PP-loop family 442 585 IPR011063 -
Aip05g03799 723 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 428 648 - -
Aip05g03799 723 CDD Alpha_ANH_like_II 441 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03799 Aip-Chr5 146246904 146254692 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03799 K14168 - gmx:100816096 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03799 05 146246904 146254692 Aip09g03994 09 146369958 146372081 ECH
Aip05g03799 05 146246904 146254692 Aip05g03799 05 146246904 146254692 ECH