Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01234 ATGGCATCAAAATCATTTAAGCCTAGTCGATTGTCTCAATCAAGTTCAACAAGGTCTGATGTCAATGAAAGCCAGAAAGTAACATTTGCTCGGAGAACGTCCTCCGGTCGCTATGTCAGCTACTCTAGAGATGATCTTGACAGTGAACTCGGGAGCACTGACTTTGCGAATTATACAGTGCATTTACCGCCAACCCCAGACAACCAACCTATGGATCCATCGATTTCACAGAAAGTTGAGGAGCAGTATGTGTCGAATTCACTCTTCACGGGTGGATTCAACAGTGTTACAAGAGCCCATTTGATGGATAAGGTGATAGAATCCGAGGCAAACCATCCACAGATGGCCGGAGCAAAAGGATCCTCATGTGCAATTCCTGGTTGTGATTCTAAAGTGATGAGTGATGAGCGCGGCGTTGATATTCTTCCTTGTGAGTGTGACTTTAAGATATGTAGGGATTGTTATATAGATGCAGTAAAAGCAGGAGGTGGGATATGCCCGGGATGCAAGGAGCCGTATAAGAACACAGAATTAGATGAAGTGGCGGTGGACAATTCACGCCCCCTTCCGCTTCCTCCGCCTAGTGGAATGTCTAAAATGGAGAGGAGATTGTCCTTGATGAAGTCAACAAAGTCAGCATTAATGAGGAGCCAAACCGGAGACTTTGATCATAATAGGTGGCTCTTTGAGACAAAGGGAACCTATGGCTATGGCAATGCTATATGGCCAAAGGAAGGAGGTTTTGGAAATGAAAAAGAGGATGGTGTTGCTGAGCCAACTGAGTTAATGAACAGACCCTGGAGGCCGCTTACTCGGAAATTGAAGATACCTGCTGCTGTTCTAAGTCCATATCGCTTGCTCATTTTTGTTCGATTGGTCGTCCTGACTCTATTCCTTATGTGGAGAGTGAGCCACAAAAATACTGATGCAATCTGGCTGTGGGGTATGTCCGTTGTTTGTGAGATATGGTTTGCCTTCTCCTGGCTTCTAGATCAACTTCCCAAACTATGCCCGATAAATCGTTCCACGGATCTCAATGTTCTGAAGGAAAAGTTCGAGACACCGACTCCTAACAATCCTACAGGGAAGTCTGATCTTCCAGGCATTGATGTCTTTGTGTCTACTGCAGATCCGGAGAAAGAACCACCTCTTGTCACAGCAAACACTATATTGTCCATTTTAGCTGCTGATTACCCTGTTGAGAAGCTTTCTTGCTATGTTTCCGATGATGGAGGTGCCCTTCTTACTTTTGAGGCAATGGCTGAAGCTGCCAGCTTTGCTAATATTTGGGTCCCCTTCTGTCGTAAACACGATATCGAGCCAAGGAATCCTGAATCATATTTCAGCCTAAAGAGAGATCCTTACAAGAACAAAGTAAAGCCAGATTTTGTCAAGGATCGAAGACGGGTGAAGCGTGAGTATGATGAGTTCAAGGTTAGGATCAATAGTTTGCCTGACTCAATCCGTCGTCGGTCCGATGCCTATCATGCTAGAGAGGAAATCAAGGCCATGAAACTTCAGAGGCAAAACAAAGAAGACGAACCCATAGAACCGGCAAAGATTCCAAAAGCAACATGGATGGCTGATGGAACTCATTGGCCAGGTACTTGGTTAAGTCCTACATCTGAACACACAAGGGGAGACCATGCTGGTATAATTCAGGTGATGTTAAAACCTCCCAGTGATGAACCTCTTCTTGGAAATGCTGATGATACAAAGCTCATTGATGTGACTAACGTTGATATCCGACTTCCCCTTCTTGTTTATGTTTCCCGGGAGAAGCGTCCGGGCTATGATCACAACAAAAAGGCTGGGGCCATGAATGCCTTGGTCCGAGCCTCAGCCATAATGTCTAATGGTCCTTTTATACTCAATCTTGACTGCGACCACTATATCTACAACTCCAAAGCTATGAGGGAAGGCATGTGCTTTATGATGGATCGTGGAGGCGACCGCATTTGTTATGTCCAGTTCCCCCAGAGATTCGAGGGGATCGATCCCTCTGATAGATATGCTAATCACAACACCGTCTTCTTTGATGTCAACATGAGAGCCCTTGATGGACTTCAAGGGCCAGTCTATGTGGGAACTGGGTGCCTTTTCAGACGCGTTGCGCTATACGGTTTCGACCCACCACGTTCAAAAGAGCATAACCAGGGTTGTTGTAGTTGCTGCTTTGGTCGTCAGAAGAAGCTTGCTTCAATGGCAAGCACCCCCGAAGAGAACAGGGCACTAAGAATGGGTGAATCTGATGATGAAGAAATGAATCTATCTTTGTTCCCTAAGAAGTTTGGAAACTCAACATTCCTCATTGATTCAATCCCAGTGGCAGAGTTCCAAGGTAGACCTCTTGCTGATCACCCTGCTGTGAAAAATGGACGGCCACCGGGTGCTCTCACCATTCCCCGGGATCTTCTTGATGCATCAACCGTGGCCGAGGCCATCAGTGTCATCTCCTGTTGGTACGAGGACAAGACCGAGTGGGGACAGCGAGTTGGATGGATCTACGGCTCGGTTACTGAGGATGTGGTCACTGGATATAGGATGCACAACAGGGGATGGAAATCAGTTTACTGTGTGACTAAGCGCGATGCCTTCCGCGGCACGGCACCAATAAATCTCACTGACAGGCTGCATCAGGTCCTTAGATGGGCTACTGGCTCAGTTGAAATATTCTTCTCACGGAACAATGCCCTTCTTGCTAGCCCAAGAATGAAATTTCTTCAACGTATCGCATACCTCAACGTCGGAATTTACCCGTTCACTTCCATATTCCTTATTGTCTACTGCTTCCTCCCGGCGCTATCCCTCTTCTCCGGCCAGTTCATTGTGCAGACTCTCAATGTTACTTTCCTTTCTTATCTATTAGGCATCACTATCACTTTGTGCATGCTTGCAGTGCTCGAAATCAAGTGGTCCGGCATTGAGTTGGAAGAGTGGTGGCGAAACGAGCAGTTCTGGCTGATTGGAGGGACCAGTGCTCATCTAGCTGCAGTCCTCCAAGGCTTGCTCAAAGTCATAGCCGGGATAGAGATCTCGTTCACATTGACTTCAAAATCTGCCGGCGATGACGTAGATGACGAGTTTGCTGACCTCTACATTGTGAAATGGACATCCCTGATGATCCCACCAATAACAATCATGATGGTTAATTTGATAGCAATTGCAGTGGGAGTTAGCAGAACGATATACAGTGTGATACCGCAGTGGAGCCGTCTAATAGGTGGTGTTTTCTTCAGTTTCTGGGTGTTGACTCATCTATACCCATTTGCAAAAGGTTTGATGGGAAGGAGAGGGAGGACACCTACCATTGTTTTTGTATGGTCAGGACTCATAGCAATCACAATCTCTCTCTTGTGGGTGGCAATCAATCCCCCTGCTGGTTCTAACCAAATTGGTGGTTCATTCCAGTTTCCATGA 3420 0.4643 MASKSFKPSRLSQSSSTRSDVNESQKVTFARRTSSGRYVSYSRDDLDSELGSTDFANYTVHLPPTPDNQPMDPSISQKVEEQYVSNSLFTGGFNSVTRAHLMDKVIESEANHPQMAGAKGSSCAIPGCDSKVMSDERGVDILPCECDFKICRDCYIDAVKAGGGICPGCKEPYKNTELDEVAVDNSRPLPLPPPSGMSKMERRLSLMKSTKSALMRSQTGDFDHNRWLFETKGTYGYGNAIWPKEGGFGNEKEDGVAEPTELMNRPWRPLTRKLKIPAAVLSPYRLLIFVRLVVLTLFLMWRVSHKNTDAIWLWGMSVVCEIWFAFSWLLDQLPKLCPINRSTDLNVLKEKFETPTPNNPTGKSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANIWVPFCRKHDIEPRNPESYFSLKRDPYKNKVKPDFVKDRRRVKREYDEFKVRINSLPDSIRRRSDAYHAREEIKAMKLQRQNKEDEPIEPAKIPKATWMADGTHWPGTWLSPTSEHTRGDHAGIIQVMLKPPSDEPLLGNADDTKLIDVTNVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRVALYGFDPPRSKEHNQGCCSCCFGRQKKLASMASTPEENRALRMGESDDEEMNLSLFPKKFGNSTFLIDSIPVAEFQGRPLADHPAVKNGRPPGALTIPRDLLDASTVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLSYLLGITITLCMLAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSAGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSVIPQWSRLIGGVFFSFWVLTHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGSNQIGGSFQFP 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01234 1139 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 31 1137 - -
Aip05g01234 1139 SUPERFAMILY RING/U-box 108 177 - -
Aip05g01234 1139 Coils Coil 494 514 - -
Aip05g01234 1139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 187 IPR013083 -
Aip05g01234 1139 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 569 710 IPR029044 -
Aip05g01234 1139 SUPERFAMILY Nucleotide-diphospho-sugar transferases 384 709 IPR029044 -
Aip05g01234 1139 Pfam RING/Ubox like zinc-binding domain 125 174 - -
Aip05g01234 1139 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 31 1137 - -
Aip05g01234 1139 Pfam Cellulose synthase 369 1129 IPR005150 GO:0016020|GO:0016760|GO:0030244
Aip05g01234 1139 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01234 Aip-Chr5 18064410 18069082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01234 16 1139 Glycosyltransferase AT3G03050 85.413 0.0 2035
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01234 K20924 - gmx:100792604 2224.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01172 03 11608868 11618875 Aip05g01234 05 18064410 18069082 ECH
Aip05g01234 05 18064410 18069082 Aip05g01234 05 18064410 18069082 ECH