Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01072 ATGGTGAATCGACGCTTCTCTCGGGTGGCCACCAGCGATGACGACGAAGACGATCGTCCCAAGCAGCTGCGCAAGAGGAAGCGCATGAAGCTTCTCGAGGAGGAGGAAGAAGAAGAAGAAGACGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGATGATTACGACAGCGACGATGACAACACCTCCCAACATAGTAAGAGGAAGAATAAGAAGAAGAAGAATAATGAGGGCAGAGGGAAAGACAAGGCCAAGGAAGCAGAAAAGGCGGCGGAGGAGTCACCTCAGGAGGACGCTAAACCCCTCGGCGATCCCATTAGGGTTTCCGGAAAGGGAAGAGGTCGGAAGAAGCATTACCAATCCTTCGAATTCGATGGCAATCAATATACACTCGAGGACCCTGTACTTCTCGTGCCCGAGGAAACAGACCAAAAGCCCTATGTTGCAATTATTAAGGACATCACACTTACCTGCAATGGCAGCATGATGCTTCCGAATCGGAAGGAGCATCCGGGGTTTATTGTGCAGAAGGTATATGACACTGTTGAAAGAAAACTCTGGAGGCTAACGGACAAGGACTATGAGGATGTTAAACAGCAAGAACTTGATGAGCTAGTACAGAAAACTCTACAACGTATCGGTAAACTGCTTGACATCGAGCCTTCAGAAGCATCTGCTGATCAGGAAGATTTGACAAAAAATAAAAGGAACACAAGGACAAAGAGTACTTCACCTCATGATGTTTCCGGGAAGGATGACGGAAATCCAAAGGGCGACCAACTTCTGAAGCCTGAAACACTAGGGAATTGTGTAAACAATGCCTCAGAGTATTATCGTATATTAGTGAAGTTTGATGTGCTAACCGGAAACACTCACCGTGATAAATGGTTGGAGAAGTTGCTTGGGCACGTTCATTACATGTGTAAATCTGATGACAGCATTAAAAGGGATGACAAAAGATTGGAGAATGTCAATTCTGATGAAATTAACAATAAAAATCCAGAATCAGCAAATGACCTTCAAGACACGGGCCAGAAGAGTTCCAAGTCTTTTGTCTGGCCAGATACTGCTGTTACAGCCATAGTTGCACTTGAAAAAGCTTCAAATGACGCCTTTTCATCGGATTTCCAGAAGTACAATAAAAAGATACGGCAATTAGATTATAATATCCATAATAATGCACTGCTAGCACGCCGCTTATTAAATGGAGAGCTGGAACCGGCAAAAATAGTAAATATGGCACCAAATGAATTGAAGGAGGCTATTACTGCTGAAGAAAAGGCCAAGGAAGAACCTGATGAATCACAACTCATACAGATGACAGATGCCCGGTGCCAAAGATGTATGGAATTGAAGGTGGGCTTGAGGGAAATTATCCATGCTGGACACGGTGACAGATATCAGCTTGAATGTGTTGCCTGTGGAAATTCCTGGTATGCCTCCCGGGATGAGGCTTCTTTGCTGACAATAGATGCACCAGTTTCAAAGAAAAGTCTAATGACAGCACCATCGAGCACTTCTAAAATTGAAGATGAAGAGAAGAAGCTGAAAAGCCCCCATGAGTCTGAAAAGTTAGCCCCTGAAAAAAAGAAAGCAAGTGAAGCTTGTGTACCTGAATCGGATGCCCAGAAATCATTTGGCAAGTCCGGGAATGATGACAATATTGAGACAACAAAACATGTTGATTAG 1692 0.4427 MVNRRFSRVATSDDDEDDRPKQLRKRKRMKLLEEEEEEEEDEEEEEEEEEEEEDDYDSDDDNTSQHSKRKNKKKKNNEGRGKDKAKEAEKAAEESPQEDAKPLGDPIRVSGKGRGRKKHYQSFEFDGNQYTLEDPVLLVPEETDQKPYVAIIKDITLTCNGSMMLPNRKEHPGFIVQKVYDTVERKLWRLTDKDYEDVKQQELDELVQKTLQRIGKLLDIEPSEASADQEDLTKNKRNTRTKSTSPHDVSGKDDGNPKGDQLLKPETLGNCVNNASEYYRILVKFDVLTGNTHRDKWLEKLLGHVHYMCKSDDSIKRDDKRLENVNSDEINNKNPESANDLQDTGQKSSKSFVWPDTAVTAIVALEKASNDAFSSDFQKYNKKIRQLDYNIHNNALLARRLLNGELEPAKIVNMAPNELKEAITAEEKAKEEPDESQLIQMTDARCQRCMELKVGLREIIHAGHGDRYQLECVACGNSWYASRDEASLLTIDAPVSKKSLMTAPSSTSKIEDEEKKLKSPHESEKLAPEKKKASEACVPESDAQKSFGKSGNDDNIETTKHVD 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01072 563 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 165 560 - -
Aip05g01072 563 SMART mid_6 328 429 IPR003618 GO:0006351
Aip05g01072 563 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 52 165 - -
Aip05g01072 563 SUPERFAMILY Elongation factor TFIIS domain 2 289 420 IPR036575 GO:0006351
Aip05g01072 563 Pfam Transcription factor S-II (TFIIS), central domain 289 435 IPR003618 GO:0006351
Aip05g01072 563 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 165 560 - -
Aip05g01072 563 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 52 165 - -
Aip05g01072 563 MobiDBLite consensus disorder prediction 508 538 - -
Aip05g01072 563 MobiDBLite consensus disorder prediction 78 101 - -
Aip05g01072 563 MobiDBLite consensus disorder prediction 34 60 - -
Aip05g01072 563 MobiDBLite consensus disorder prediction 222 267 - -
Aip05g01072 563 MobiDBLite consensus disorder prediction 227 260 - -
Aip05g01072 563 MobiDBLite consensus disorder prediction 500 563 - -
Aip05g01072 563 MobiDBLite consensus disorder prediction 326 349 - -
Aip05g01072 563 Gene3D - 283 421 IPR036575 GO:0006351
Aip05g01072 563 ProSiteProfiles TFIIS central domain profile. 293 447 IPR003618 GO:0006351
Aip05g01072 563 MobiDBLite consensus disorder prediction 1 118 - -
Aip05g01072 563 MobiDBLite consensus disorder prediction 328 349 - -
Aip05g01072 563 Gene3D - 93 172 IPR043151 -
Aip05g01072 563 Coils Coil 22 62 - -
Aip05g01072 563 MobiDBLite consensus disorder prediction 8 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01072 Aip-Chr5 15292781 15296592 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01072 - - cam:101495294 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01072 05 15292781 15296592 Aip05g01072 05 15292781 15296592 ECH
Aip05g01072 05 15292781 15296592 Aip03g03208 03 104592417 104596949 PCT