Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03208 ATGGGGAATCGACGGTTTACTCAGGTGGCAATGAGCGACGACGAGGACGAAGAACCGCCACGTCCCAAGCAGCAGCCAGCTTCCTCTTGTTCTCCACCGTCGAAGCAGCAGCAGCAGAAGAAGAGGAAGCGCATGAAGCTGCAGGAGGAAGAAGACGAGGATGAGGAGGAGGAGGAGCAACTGCAGCAGCAGCAGGAGGAGGAGGAAGAGGAGGAAGAAGAGGAGCGGAAGAGGAAGAAGAGGAAGGGGAAGGAGAAGGATAAGCATGTGGAAGAAGAGGAACCCCCTCAGGAAGACGCCAAGCCCATTGGCGATCCCATTAGGGTTTCTGGAAAGGGGAGAGGTAGGAAGAAGCATTTCGAGTCATTCGAGTTTGATGGAAACCAGTACACTCTGGAGGACCCTGTACTTCTTGTTCCTGAGGATAAGGACCAGAAACCCTATGTGGCTATTATTAAAGATATTACACAGTCCCTAAATGGCAGCATGATGGTTACCGGGCAGTGGTTTTACCGTCCTGAAGAAGCAGAAAGGAAAGGTGGTGGCAGTTGGCAATCACGTGATACAAGGGAACTCTTTTATAGTTTCCACCGTGATGAGGTTCCAGCTGAATCTGTTATGCATAAGTGCGTTGTGCATTTTGTTCCCATACACAAACAGCTTCCGAACCGGAAGCAGCATCCTGGCTTCATTGTACAAAAGGTGTATGACACTGTAGAAAGGAAACTCTGGAAGCTAACTGATAAGGACTATGAAGACAACAAACAGCAAGAGATTGATGAGCTTGTTCAGAAAACCCTTAAGCGGATGGGTGAATTGCCTGATATCGAGCCCGAAGAAGCTCCTGCTGCTGATCAGGAAGATGTTATGAAAAGTAAAAGGATTTTAAGGAAGAAAGGCATTTCGCCTCTTGATGTTTCACGAGAGGAGGAATCAGGTCGTAAGGGTGACCAACATCTGAAACCCGAAACACCCGGGAGTTGTGTAAGTAATTCCTCTGAGCATTATCGCATATTAGTGGATTGGAATGTGTTAACAGGGGATACCCATCGTGACAAAGTCCTGGAGAAGTTGCTTCAAAGTGTTCAATACGTGTTTAATTCGGATGACAGCATAAAGAAGAAAGAGAAAGGAAGTGAAAATTCTGATCCAGGTTATAATGGAAGCAATAATAGAACTTCCCAATCACCAAATGAATGTCAAGATAAGGTTCAGAAGAGTTCCAAGTCTTTGGTCTGGCCGGATGCTGCAGTAACAGCTGTAGTTGCTTTGGAAAAAGTTTCACATGAGACACTTTCATCGGATTATCAGAAGTATAACCAAAAGCTTCGGCAATTAGTTTTTAATCTGAAGAACAACACATTGCTAGCACGTCGTCTGTTAAATGGAGAATTGGAACCTTCAAAAGTATTTAACATGACACCCAATGAATTGAAGGAGGGTTTGACTGCTGATGAGATATCCAAGAAAGAGCCTGATGAGTCACAGCACATGCAGATGACCGATGCGCGCTGCAGAAGATGCAGAGAATGCAAGGTGGGTTTGAGGGATATCATCCATGCAGGACATGGCGACAGATATCAGCTGGAATGTATTGCCTGCGGTAACTCATGGTATGCCTCACGTGATGAGGTATCAACACTGACCATAGATGCTTCTGATTCTAAACGGAGTAGTGTAGGGACAGCACCGTGGGCCACTGCTAAATTCGAGAGTGTTGAGAAGAAGCTGGTGAGCCCTCGTGAACCTGAAAGAGCTGGTAATGACATCTTCAAGAAAACAAGCGAAGCATATATGCCTGTATTGGACTCCCAAAAATCATTTGGCAAGTCCAGGAAAGATGACAACACTGAAGCTAAAAAACAAGCTGACTAG 1875 0.4587 MGNRRFTQVAMSDDEDEEPPRPKQQPASSCSPPSKQQQQKKRKRMKLQEEEDEDEEEEEQLQQQQEEEEEEEEEERKRKKRKGKEKDKHVEEEEPPQEDAKPIGDPIRVSGKGRGRKKHFESFEFDGNQYTLEDPVLLVPEDKDQKPYVAIIKDITQSLNGSMMVTGQWFYRPEEAERKGGGSWQSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQLPNRKQHPGFIVQKVYDTVERKLWKLTDKDYEDNKQQEIDELVQKTLKRMGELPDIEPEEAPAADQEDVMKSKRILRKKGISPLDVSREEESGRKGDQHLKPETPGSCVSNSSEHYRILVDWNVLTGDTHRDKVLEKLLQSVQYVFNSDDSIKKKEKGSENSDPGYNGSNNRTSQSPNECQDKVQKSSKSLVWPDAAVTAVVALEKVSHETLSSDYQKYNQKLRQLVFNLKNNTLLARRLLNGELEPSKVFNMTPNELKEGLTADEISKKEPDESQHMQMTDARCRRCRECKVGLRDIIHAGHGDRYQLECIACGNSWYASRDEVSTLTIDASDSKRSSVGTAPWATAKFESVEKKLVSPREPERAGNDIFKKTSEAYMPVLDSQKSFGKSRKDDNTEAKKQAD 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03208 624 Gene3D - 388 480 IPR036575 GO:0006351
Aip03g03208 624 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 621 - -
Aip03g03208 624 SUPERFAMILY Elongation factor TFIIS domain 2 344 479 IPR036575 GO:0006351
Aip03g03208 624 CDD BAH_plant_3 110 256 - -
Aip03g03208 624 MobiDBLite consensus disorder prediction 50 72 - -
Aip03g03208 624 Gene3D - 112 336 IPR043151 -
Aip03g03208 624 MobiDBLite consensus disorder prediction 273 330 - -
Aip03g03208 624 MobiDBLite consensus disorder prediction 372 407 - -
Aip03g03208 624 SMART BAH_4 128 247 IPR001025 GO:0003682
Aip03g03208 624 MobiDBLite consensus disorder prediction 284 321 - -
Aip03g03208 624 MobiDBLite consensus disorder prediction 602 624 - -
Aip03g03208 624 MobiDBLite consensus disorder prediction 1 115 - -
Aip03g03208 624 Pfam Transcription factor S-II (TFIIS), central domain 346 497 IPR003618 GO:0006351
Aip03g03208 624 Coils Coil 35 87 - -
Aip03g03208 624 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 621 - -
Aip03g03208 624 MobiDBLite consensus disorder prediction 607 624 - -
Aip03g03208 624 ProSiteProfiles BAH domain profile. 128 247 IPR001025 GO:0003682
Aip03g03208 624 ProSiteProfiles TFIIS central domain profile. 350 506 IPR003618 GO:0006351
Aip03g03208 624 MobiDBLite consensus disorder prediction 73 101 - -
Aip03g03208 624 MobiDBLite consensus disorder prediction 382 407 - -
Aip03g03208 624 SMART mid_6 348 488 IPR003618 GO:0006351
Aip03g03208 624 Pfam BAH domain 129 245 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03208 Aip-Chr3 104592417 104596949 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03208 - - aip:107630794 1124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03208 03 104592417 104596949 Aip03g03208 03 104592417 104596949 ECH
Aip05g01072 05 15292781 15296592 Aip03g03208 03 104592417 104596949 PCT