Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00947 ATGGACCATTCGAATACTGTTCCTCCTTCTCCATCTTCTTCTTCTTCTCCTTCTTCTTCTTTTTCCTCTCATCGCGTGGAGCGAATGATAAACTCGAACCACTACAAGTCCCCTTCGAGAACAATCTGCTCCGACAGGTTCATACCGTACAGATCCGCCTCCAAATTCTCCCTATTTGACATTCCCGCCACCGATAATACCTCCACCCCTTACTCCTCCCTCCTCCGCACGGCGCTATTCGGACCCGATGCACCGCTCACGCCCGATAAGACCAGCCACAACATTTTTCGTTACAAGACGGAGACTCGCCAGTCCATGCACTCTCTCTCCCCCTTCATCCACAATGACGACGTAGTTTCCACTGTTAATCATACCCCTGTTAAGCCTCCCAGGAAAATTCCCCGTTCACCATACAAGGTTCTGGATGCGCCTGCGTTGCAAGATGATTTTTATTTGAACCTCGTGGATTGGTCTTCGCTCAATGTTTTGGCTGTTGGTCTTGGTAACTGCGTTTATTTGTGGAATGCTTGTAGCAGCAAGGTAACTAAATTGTGTGACTTGGGGAATGATGATTGCGTTTGTTCTGTTGGTTGGGCTCAGCGCGGTACACTCCTTGCTGTTGGAACTAATAGTGGTCAAGTTCAGATTTGGGATGCATCTCAATGCAAGATGATAAGAACTATGGAAGGTCATCGTTTACGAGTTGGGGCCTTGGCCTGGAGTTCATCTCTTTTATCTTCTGGTGGCAAGGATAAAAATATTTATCAAAGAGATATACGTGCACAAGATGATTTTGTCAGTAAACTGTCCGGGCACAAGTCAGAGGTTTGTGGACTGAAGTGGTCTTATGATAACCGTGAGTTAGCATCTGGAGGAAATGATAACAGATTGCTTGTTTGGAATCAACACTCAACTCAACCCGTCCTGAAGTACTGTGAACACACGGCAGCTGTTAAAGCAATAGCGTGGTCTCCTCATGTTCACGGACTCCTTGCATCTGGAGGAGGAACTGCAGATCGATGTATTCGTTTCTGGAATACAACCACAAACTCACACTTAAGCTGTATGGACACTGGAAGTCAGGTTTGCAATCTTGCCTGGTCTAAGAATGTTAATGAACTGGTAAGCACACATGGCTACTCCCAGAACCAGATAATAGTTTGGAGATACCCCACCATGTCTAAGCTCGCAACTCTTACAGGCCATACTTATAGAGTTCTGTATCTTGCCATCTCTCCAGATGGGCAGACTATTGTCACTGGTGCTGGAGATGAAACACTTAGGTTTTGGAACGTATTCCCTTCCTTAAAATCACAGAATACTGAGAGTGAAATTGGAGCATTATCTTTTGGGAGAACAATTATTAGGTGA 1371 0.4559 MDHSNTVPPSPSSSSSPSSSFSSHRVERMINSNHYKSPSRTICSDRFIPYRSASKFSLFDIPATDNTSTPYSSLLRTALFGPDAPLTPDKTSHNIFRYKTETRQSMHSLSPFIHNDDVVSTVNHTPVKPPRKIPRSPYKVLDAPALQDDFYLNLVDWSSLNVLAVGLGNCVYLWNACSSKVTKLCDLGNDDCVCSVGWAQRGTLLAVGTNSGQVQIWDASQCKMIRTMEGHRLRVGALAWSSSLLSSGGKDKNIYQRDIRAQDDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLLVWNQHSTQPVLKYCEHTAAVKAIAWSPHVHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLAWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSLKSQNTESEIGALSFGRTIIR 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00947 456 ProSitePatterns Trp-Asp (WD) repeats signature. 418 432 IPR019775 -
Aip05g00947 456 MobiDBLite consensus disorder prediction 1 25 - -
Aip05g00947 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 399 432 IPR001680 GO:0005515
Aip05g00947 456 PANTHER PROTEIN FIZZY-RELATED 1 8 456 - -
Aip05g00947 456 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 301 - -
Aip05g00947 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 310 IPR001680 GO:0005515
Aip05g00947 456 Gene3D - 127 435 IPR015943 GO:0005515
Aip05g00947 456 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 8 456 IPR033010 GO:0010997|GO:0097027|GO:1904668
Aip05g00947 456 SUPERFAMILY WD40 repeat-like 137 432 IPR036322 GO:0005515
Aip05g00947 456 Pfam Anaphase-promoting complex subunit 4 WD40 domain 181 242 IPR024977 -
Aip05g00947 456 Pfam WD domain, G-beta repeat 395 431 IPR001680 GO:0005515
Aip05g00947 456 Pfam WD domain, G-beta repeat 266 301 IPR001680 GO:0005515
Aip05g00947 456 Pfam WD domain, G-beta repeat 306 346 IPR001680 GO:0005515
Aip05g00947 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 227 IPR001680 GO:0005515
Aip05g00947 456 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 399 432 - -
Aip05g00947 456 SMART WD40_4 134 175 IPR001680 GO:0005515
Aip05g00947 456 SMART WD40_4 348 389 IPR001680 GO:0005515
Aip05g00947 456 SMART WD40_4 221 258 IPR001680 GO:0005515
Aip05g00947 456 SMART WD40_4 178 218 IPR001680 GO:0005515
Aip05g00947 456 SMART WD40_4 392 431 IPR001680 GO:0005515
Aip05g00947 456 SMART WD40_4 262 301 IPR001680 GO:0005515
Aip05g00947 456 SMART WD40_4 304 346 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00947 Aip-Chr5 13185958 13190586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00947 204 443 Miscellaneous Gene Families AT5G08390 20.492 2.51e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00947 K03364 - gmx:100780928 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00947 05 13185958 13190586 Aip05g00947 05 13185958 13190586 ECH
Aip01g01771 01 78448346 78454307 Aip05g00947 05 13185958 13190586 PCT