Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01771 ATGATCAACTCCTCACACTACTGCTCACCTTCTAGAACCATCTACTCCGACAGGTTCATACCGAGCAGATCTGCCTCCAAGTTCGCCTTATTCGACATACCTGCTTCGCCGACCTCCGCCGCCTCGGGAGTTTCACCGCCGGCGGCTGACGGCAGGGAGGATAGCTCCAGTGCTTACACCATGCTGTTGAAGACTGCCTTGTTCGGACCCGACGCCGCCGGAGTTCCGGTACCGGTGACACCAGAGAAGAGGAGCTCGTCGGCCTCCGTGATGACGATTTCAAGCCGGAACATATTCCGGTACAAGACGGAGACTCGGCAGTCCTTCCATTCGCTTTCGCCGTTCATGTGCGACGATGCGGTCCCCGGCGTTAATCACAGCCCTGTCAAGGCTCCTAGGAAGGTTCCTCGGTCGCCGTATAAGGTTCTAGACGCGCCTGCGCTGCAAGACGATTTTTATCTGAATCTGGTGGATTGGTCTTCGCACAACGTGCTGGCGGTTGGTCTTGGTAACTGTGTTTATTTGTGGAATGCGTGTAGCAGCAAGGTAACTAAATTATGTGATTTGGGGATTGACGACTGCGTTTGTTCAGTTGGCTGGGCTCAACGGGGTACCCACCTTGCTGTTGGAACTAGCAATGGAAAAGTTCAGATTTGGGATGCAGCTCGATGTAAGAAGATAAGATCGATGGAGGGTCATCGTTTACGTGTTGGAGCCTTGGCCTGGAGTTCTTCTCTTTTGTCCTCAGGTGGCCGGGATAAGAATATATATCAACGAGATATAAGAGCACAGGAAGATTTTGTCAGTAAACTTTCGGGGCACAAATCAGAGGTTTGTGGACTGAAGTGGTCATATGATAACCGTGAGTTAGCATCTGGAGGAAATGACAACAGACTGTTTGTTTGGAATCAACATTCAACCCAGCCTGTCCTTAAGTATTGTGAGCATACAGCAGCTGTTAAAGCGATTGCATGGTCTCCTCATATTCATGGACTTCTTGCATCAGGAGGAGGAACTGCAGATCGATGTATTCGATTCTGGAATACAACCACAAACTCACACTTAAGTTGTATGGACACTGGAAGTCAGGTTTGTAATCTTGTTTGGTCAAAAAATGTCAATGAATTGGTAAGCACACATGGATACTCCCAGAATCAGATAATAGTTTGGAGATACCCGACCATGTCGAAGTTAGCAACTCTTACAGGTCATACATATAGAGTTCTTTATCTTGCCATCTCTCCAGATGGGCAGACTATTGTAACTGGAGCTGGAGATGAAACACTTAGATTTTGGAATGTATTTCCTTCCCCTAAATCACAGAATACTGAGAGTGAAATTGGAGCTTCATCTCTCGGAAGAACAATTATAAGGTGA 1377 0.4771 MINSSHYCSPSRTIYSDRFIPSRSASKFALFDIPASPTSAASGVSPPAADGREDSSSAYTMLLKTALFGPDAAGVPVPVTPEKRSSSASVMTISSRNIFRYKTETRQSFHSLSPFMCDDAVPGVNHSPVKAPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDCVCSVGWAQRGTHLAVGTSNGKVQIWDAARCKKIRSMEGHRLRVGALAWSSSLLSSGGRDKNIYQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHIHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTESEIGASSLGRTIIR 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01771 458 SUPERFAMILY WD40 repeat-like 140 440 IPR036322 GO:0005515
Aip01g01771 458 ProSitePatterns Trp-Asp (WD) repeats signature. 420 434 IPR019775 -
Aip01g01771 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 312 IPR001680 GO:0005515
Aip01g01771 458 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 401 434 - -
Aip01g01771 458 Gene3D - 129 438 IPR015943 GO:0005515
Aip01g01771 458 Pfam WD domain, G-beta repeat 268 303 IPR001680 GO:0005515
Aip01g01771 458 Pfam WD domain, G-beta repeat 397 433 IPR001680 GO:0005515
Aip01g01771 458 Pfam WD domain, G-beta repeat 309 348 IPR001680 GO:0005515
Aip01g01771 458 PANTHER - 5 458 - -
Aip01g01771 458 Pfam Anaphase-promoting complex subunit 4 WD40 domain 190 244 IPR024977 -
Aip01g01771 458 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 303 - -
Aip01g01771 458 SMART WD40_4 306 348 IPR001680 GO:0005515
Aip01g01771 458 SMART WD40_4 136 177 IPR001680 GO:0005515
Aip01g01771 458 SMART WD40_4 223 260 IPR001680 GO:0005515
Aip01g01771 458 SMART WD40_4 394 433 IPR001680 GO:0005515
Aip01g01771 458 SMART WD40_4 180 220 IPR001680 GO:0005515
Aip01g01771 458 SMART WD40_4 264 303 IPR001680 GO:0005515
Aip01g01771 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 195 229 IPR001680 GO:0005515
Aip01g01771 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 401 434 IPR001680 GO:0005515
Aip01g01771 458 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 5 458 IPR033010 GO:0010997|GO:0097027|GO:1904668
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01771 Aip-Chr1 78448346 78454307 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01771 207 436 Miscellaneous Gene Families AT5G08390 21.459 5.32e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01771 K03364 - gmx:100780928 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01771 01 78448346 78454307 Aip05g00947 05 13185958 13190586 PCT