Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00873 ATGCATCACTATTTATTCCATGTCATTACCATCACCAATCCTATCACTGAAATGGGTTGGTGTTTTCGTGTGATTTCCCTATTATTATTGTTGTTGGGAGCAGAATCAAAGACTCATTGGAGTGACACAGAGTTTCTGAAGGATTTCAAGAATGGGATTCACCCAAGTTCTGTGAACCCCGGCTCCTGCTTAAGTTCATGGGACTTCACTCTCGACCCGTGCGATAATCTCTTCACTCAGAAATTCACGTGCGGCTTCAGGTGCGACTCCATCGACTCCGGCTTGAGCCGAGTCACCGAACTCGCTCTCGACCAGGCCGGTTACTCCGGTCCCCTGCCTCCAACTTGGAATCTTCTTCCCTACCTCCAAACCCTCGATCTCTCCAACAACTTCTTCTACGGCAATATTCCCGGCTCCCTATCCAACTTGACTCGCTTGCGCCGACTCGCCCTCTCCGCTAACTCCTTCTCCGGCGCCATACCCTCCTCCATTGGCTCACTCTCCACTCTCGAGGAGCTCTGCCTCGATCACAACAACCTCACCGGAGCTATCCCCGCCACCTTCAACGGCCTCAAGAACTTGAAGAGGCTGGAGCTTCAATCCAACAAGCTCCAGGGTTGGGTTCCTCCATACTTGGGTCCCCTGAACAACCTTAACTACCTGGACGCCAGCGACAATTCCCTGATCGGAGAATTGCCAATCTGGCTGCCGGCTTCCCTGGTTCAGATTTCGATGAGGAACAACAAGTTGAGCGGAGTATTAAAGCCAGAAGTGTTGAAAAACCTGAAGGACTTGCAGGTTTTGGATTTGAGTTGGAACAAGCTGAGTGGGGCAGTTCCTTTTGCTCTTTTCGAGCTACCATCGCTGCAGCAATTAACGCTGTCTTTTAACGAGTTTTCTTCGGTGGAAGAAAACTCCGCAGGATTTGAGAAGAGCGGATTGATCGCGGTAGACATAAGCAACAACAAGCTTAGGGGTAGTTTGCCATGGTTCATGGCGTGGATGGCTCAGCTTTCGGCATTGTCGCTGGAGAACAACATGTTGAGTGGCAAGATACCAAGGGAGTATGCGATGAAGGTGGTGTCCCCGCGAAATGGAGAATCAAGTTTTGGGAGGCTTCTGTTGGGTGGGAACTACTTGTACGGAGGGATACCTCACCCTCTGTTGCGTCTTAAACCCGATTCTGCAAATGTCACCCTTGCTAATAACTGCTTCTATAGGTGCCCTCGCACCTTCTTTTTCTGCCAAGGTGCTGCCCAGAAGCCCCCGCCACTGTGTCATAAGTAA 1287 0.5066 MHHYLFHVITITNPITEMGWCFRVISLLLLLLGAESKTHWSDTEFLKDFKNGIHPSSVNPGSCLSSWDFTLDPCDNLFTQKFTCGFRCDSIDSGLSRVTELALDQAGYSGPLPPTWNLLPYLQTLDLSNNFFYGNIPGSLSNLTRLRRLALSANSFSGAIPSSIGSLSTLEELCLDHNNLTGAIPATFNGLKNLKRLELQSNKLQGWVPPYLGPLNNLNYLDASDNSLIGELPIWLPASLVQISMRNNKLSGVLKPEVLKNLKDLQVLDLSWNKLSGAVPFALFELPSLQQLTLSFNEFSSVEENSAGFEKSGLIAVDISNNKLRGSLPWFMAWMAQLSALSLENNMLSGKIPREYAMKVVSPRNGESSFGRLLLGGNYLYGGIPHPLLRLKPDSANVTLANNCFYRCPRTFFFCQGAAQKPPPLCHK 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00873 428 Pfam Leucine rich repeat 169 228 IPR001611 GO:0005515
Aip05g00873 428 Pfam Leucine rich repeat 240 298 IPR001611 GO:0005515
Aip05g00873 428 Gene3D Ribonuclease Inhibitor 208 310 IPR032675 -
Aip05g00873 428 Gene3D Ribonuclease Inhibitor 311 411 IPR032675 -
Aip05g00873 428 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 25 427 - -
Aip05g00873 428 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 25 427 - -
Aip05g00873 428 SMART LRR_typ_2 286 308 IPR003591 -
Aip05g00873 428 SMART LRR_typ_2 262 285 IPR003591 -
Aip05g00873 428 SMART LRR_typ_2 191 215 IPR003591 -
Aip05g00873 428 SMART LRR_typ_2 167 190 IPR003591 -
Aip05g00873 428 SMART LRR_typ_2 119 143 IPR003591 -
Aip05g00873 428 Pfam Leucine Rich Repeat 122 143 IPR001611 GO:0005515
Aip05g00873 428 Gene3D Ribonuclease Inhibitor 41 207 IPR032675 -
Aip05g00873 428 SUPERFAMILY L domain-like 85 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00873 Aip-Chr5 11897594 11899138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00873 71 414 Receptor kinase-like Gene Family AT5G46330 29.032 6.46e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00873 - - gmx:100811366 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00873 05 11897594 11899138 Aip05g00873 05 11897594 11899138 ECH
Aip05g00873 05 11897594 11899138 Aip01g00743 01 12668540 12670207 PCT