Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00516 atgatggcatgtcatcAGCGGCAACAGGTTGCGGCGGAGGCGGAGGCGTGTTGCGGCAGCGAGGATATGCAAACGAGATTTGCAGCAGATGAAGAGGATGAGAAAAGGCAAATTGATAATCAAGGCACCGCCATACAACTCATTCTAGACCGAAATTCTGGATGCGGATTTGCTTCAAAGAGTAGGTACATGTTTGGGCGTATTAGCATGAAGATTAAGCTCATTGCCGGAGACTCTGCTGGGACTGTGACGGCATTTTATATGAGCTCGGACACGGACGCTATAAGGGACGAGCTTGACTTTGAGTTCTTGGGAAACCGTAGTGGTCAACCATACACTGTTCAGACTAACATCTACGCCGACGGCAAAGGGGGTAGAGAACAAAGGGTCAACCTCTGGTTTGATCCTTCAGCCCAATTCCACACTTACACTATTCTCTGGAACCACCACCACATTGTGTTCTACGTGGATGAGTTTCCGATAAGAGTGTACAAGAACGACGTGGCAAGGGGAGTTGCATACCCAACAATGCAAGGAATGGGAGTGTACTCAACGCTGTGGGAAGCAGATAACTGGGCAACAAGGGGAGGCTTGGAGAAAATTGATTGGAGGAAGGCACCCTTCTATGCATACTACAAGGACTTCGACATTGAAGGCTGCCAACTCCCAGGGCCCACCAATTGTGCCTCCAACGCAAGTAACTGGTGGGAGGGTGCTGCTTACCAGGCCCTTAGTCCCACTCAAGCCCGCTTGTACAGGTGGGTTCGCATCAACCACATTATCTATGATTATTGCCAAGACAAGCCACGATTCCCACTCGGCCCACCACCCGAATGCCTTTCCTAG 846 0.4953 MMACHQRQQVAAEAEACCGSEDMQTRFAADEEDEKRQIDNQGTAIQLILDRNSGCGFASKSRYMFGRISMKIKLIAGDSAGTVTAFYMSSDTDAIRDELDFEFLGNRSGQPYTVQTNIYADGKGGREQRVNLWFDPSAQFHTYTILWNHHHIVFYVDEFPIRVYKNDVARGVAYPTMQGMGVYSTLWEADNWATRGGLEKIDWRKAPFYAYYKDFDIEGCQLPGPTNCASNASNWWEGAAYQALSPTQARLYRWVRINHIIYDYCQDKPRFPLGPPPECLS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00516 281 PIRSF EndGlu_transf 1 281 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aip05g00516 281 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 21 212 IPR000757 GO:0004553|GO:0005975
Aip05g00516 281 ProSitePatterns Glycosyl hydrolases family 16 active sites. 98 108 IPR008263 GO:0004553|GO:0005975
Aip05g00516 281 Gene3D - 10 281 - -
Aip05g00516 281 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 6-RELATED 20 280 - -
Aip05g00516 281 SUPERFAMILY Concanavalin A-like lectins/glucanases 37 280 IPR013320 -
Aip05g00516 281 Pfam Glycosyl hydrolases family 16 29 204 IPR000757 GO:0004553|GO:0005975
Aip05g00516 281 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 231 279 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Aip05g00516 281 CDD GH16_XET 38 279 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aip05g00516 281 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 20 280 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00516 Aip-Chr5 6039904 6046530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00516 28 279 Glycoside Hydrolase AT5G65730 74.206 1.21e-144 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00516 K08235 - gmx:100791974 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00516 05 6039904 6046530 Aip05g00516 05 6039904 6046530 ECH
Aip05g00516 05 6039904 6046530 Aip01g01176 01 28601329 28614583 PCT