Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01176 ATGTCTTCTGAGAGACCAGAGCTTCTGGTTATGGCGACGAAGCTCTTCGAGCTTGGTGGTGCCGGCGAAACTCCTCCTCCGCTTGCATGGCCCGAGACAGAACTTTCTCGGGGATCTTTTCCCAGATTTTTTTATGCTGGAAGCGCTGATGGAGTTGTTCTTGTGGAGGATGTCTCAACTCTCAAGTCTCAAGTCTCCGACGACGTCACCTCACCTCACCGCGGCTCTGTCGTCTTCTTCGTTGCTTCTCCTTGCTCCGCTTCATCGTCGTCATCGTCGCGCCGTCTCCCTCGTCTGCTCTCTCGGACAGGTTGGTGGTCTCCGTCGTCTGCGTCCTCTACTCTCTCGGACAGAATTTTTTTTGGTTATTTTTCTGCTTCCTTCGAATACCAAGGAGTTCCTATCCAGTCAAATACTCCAAAGAAGGTAAGCTATTCCAGTCATGTTGAATCTGGCCTCACTTCCATTTTTCACTGCTGCGACAAACATCAATCCACCATTGCCAAGGTTGAAGAAGATTGTTCCTGGGAATTGCACTTGCCATTGGAGAGTTGTTCCATATTTCTACAATTTGTGGGCAAAAAACCAGCGTATGCAGGGCTAATTCCGGAGCGGCGGAGCAACGAGGACAACGCTGATCTGCTTGAACCAGATTTTGCAGAGTACTCACCGGAACTAGTATCCACTTTTGAGCAAGACTTTAGAGCCACGTGGTCTGAGTCTCATATCAGGCATATTGATCAAGGCAGAACAATCCAACTCATGCTCGACCAAAGCTCCGGATGTGGGTTTGCTTCCAAGGTGAAGTACATGTTTGGGCGTGTTAGCATGAAGATCAAACTCGTCCCTGGAGACTCTGCTGGCACCGTCACCGCATTTTACATGAATTCTGATACAGATTCTGTTCGTGATGAGCTGGACTTCGAGTTCTTGGGGAACAGGAGTGGACAGCCATACACGGTTCAAACAAACGTATATGCTCATGGAAAGGGTAATAGAGAGCAAAGGGTCAACCTCTGGTTTGATCCTTCTGCTGATTTCCATACCTACACTATTCTCTGGAACCATAAACATATTGTATTTTCCGTGGACGATTTCCCCATCAGAGTATACAAGAACAACGAAGCGAAAGGGGTGCCATACCCAAAGATGCAAGCCATGGGAGTGTACTCAACACTATGGGAAGCAGATAACTGGGCAACAAGAGGTGGGTTAGAGAAAATCGATTGGAGCAAAGCACCCTTCAATGCTTACTATAAAGACTTCGACATTGAAGGGTGTTCAGTTCCGGGTCCGGCAAGCTGCTCCTCCAACCCGAGTAACTGGTGGGAAGGGGCAGCCTACCAAGAACTTAGTGCTATTCAAGCAAGGAGGTACAGATGGGTTCGAATTAACCACGTTGTCTATGACTATTGTCAAGATAAGTCAAGGTTCCCAGTCACCCCACCTGAGTGTCTTGCTGGCATTTGA 1470 0.483 MSSERPELLVMATKLFELGGAGETPPPLAWPETELSRGSFPRFFYAGSADGVVLVEDVSTLKSQVSDDVTSPHRGSVVFFVASPCSASSSSSSRRLPRLLSRTGWWSPSSASSTLSDRIFFGYFSASFEYQGVPIQSNTPKKVSYSSHVESGLTSIFHCCDKHQSTIAKVEEDCSWELHLPLESCSIFLQFVGKKPAYAGLIPERRSNEDNADLLEPDFAEYSPELVSTFEQDFRATWSESHIRHIDQGRTIQLMLDQSSGCGFASKVKYMFGRVSMKIKLVPGDSAGTVTAFYMNSDTDSVRDELDFEFLGNRSGQPYTVQTNVYAHGKGNREQRVNLWFDPSADFHTYTILWNHKHIVFSVDDFPIRVYKNNEAKGVPYPKMQAMGVYSTLWEADNWATRGGLEKIDWSKAPFNAYYKDFDIEGCSVPGPASCSSNPSNWWEGAAYQELSAIQARRYRWVRINHVVYDYCQDKSRFPVTPPECLAGI 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01176 489 SUPERFAMILY Concanavalin A-like lectins/glucanases 230 487 IPR013320 -
Aip01g01176 489 CDD GH16_XET 228 485 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aip01g01176 489 ProSitePatterns Glycosyl hydrolases family 16 active sites. 305 315 IPR008263 GO:0004553|GO:0005975
Aip01g01176 489 Gene3D - 221 487 - -
Aip01g01176 489 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 196 419 IPR000757 GO:0004553|GO:0005975
Aip01g01176 489 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 228 487 IPR044791 GO:0004553
Aip01g01176 489 Pfam Glycosyl hydrolases family 16 231 412 IPR000757 GO:0004553|GO:0005975
Aip01g01176 489 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 6-RELATED 228 487 - -
Aip01g01176 489 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 438 485 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01176 Aip-Chr1 28601329 28614583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01176 228 487 Glycoside Hydrolase AT5G65730 80.000 2.16e-163 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01176 K08235 - gmx:100807653 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00516 05 6039904 6046530 Aip01g01176 01 28601329 28614583 PCT