Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00449 ATGTACAGAGAGAGAGAGCGAGAGCGAGGTACCAATACCAAATCGGAGGTTGATCGGAAGCGAATCAACGACGTCCTCGACAAGCAGCTGGAGCGATCGTCGCCGTCAACGTCGACGTCGAGGCCAATCAACGGCAAGGACAGGCCCTCCTCTCTCTTATCCGGCAAGTCCTCCTCCGCACGCGATCACGCCCTCAGGGACTCTCGCTCCACCGCCTCCGCCACTATCTCCAAGAACTCTAACGCTTCCGATGAGGAATCTGAGACTGACAGCGAGGAGTCTGATGTTAGTGGTTCTGATGGAGATGACACGTCGTGGATCTCGTGGTTCTGCAATTTGAGAGGGAACGAGTTCTTCTGCGAGGTGGATGATGATTACATCCAGGATGACTTCAACCTTTGTGGATTGAGCAGTCAAGTGCCTTACTATGATTACGCTCTTGATTTGATTTTGGATGTTGAATCCTCTCATGGTGACATGTTTACAGAGGAACAAAATGAGTTAATTGAATCAGCAGCAGAGATGCTATATGGTCTGATTCATGCCAGGTATATCTTGACAGGCAAAGGATTGGCCTCCATGCTGGACAAGTACAAGAACTATGATTTTGGTAGATGTCCAAGAGTGTACTGCTCTGGGCAGCCCTGCCTTCCGGTTGGTCAGTCAGATGTTCCAAGGTCCAGTACCGTGAAAATATACTGCCCAAGGTGTGAAGACATTTATTATCCGCGGTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACTACATTTCCTCACCTCTTCCTGATGACTTATGGACAACTGAAGCCACAGAAACCATCACAGAGCTATGTTCCAAGAGTCTTTGGCTTCAAGCTTCACAAGCCATGA 879 0.4869 MYRERERERGTNTKSEVDRKRINDVLDKQLERSSPSTSTSRPINGKDRPSSLLSGKSSSARDHALRDSRSTASATISKNSNASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYILTGKGLASMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDVPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGFKLHKP 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00449 292 ProSitePatterns Casein kinase II regulatory subunit signature. 206 237 IPR000704 GO:0005956|GO:0019887
Aip05g00449 292 SUPERFAMILY Casein kinase II beta subunit 103 291 IPR035991 GO:0005956|GO:0019887
Aip05g00449 292 MobiDBLite consensus disorder prediction 29 58 - -
Aip05g00449 292 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 98 202 IPR016149 GO:0005956|GO:0019887
Aip05g00449 292 Gene3D - 203 277 - -
Aip05g00449 292 MobiDBLite consensus disorder prediction 1 101 - -
Aip05g00449 292 PANTHER CASEIN KINASE II SUBUNIT BETA 13 292 IPR000704 GO:0005956|GO:0019887
Aip05g00449 292 PANTHER CASEIN KINASE II SUBUNIT BETA 13 292 - -
Aip05g00449 292 Pfam Casein kinase II regulatory subunit 105 288 IPR000704 GO:0005956|GO:0019887
Aip05g00449 292 MobiDBLite consensus disorder prediction 1 28 - -
Aip05g00449 292 PRINTS Casein kinase II regulatory subunit family signature 105 121 IPR000704 GO:0005956|GO:0019887
Aip05g00449 292 PRINTS Casein kinase II regulatory subunit family signature 122 136 IPR000704 GO:0005956|GO:0019887
Aip05g00449 292 PRINTS Casein kinase II regulatory subunit family signature 177 198 IPR000704 GO:0005956|GO:0019887
Aip05g00449 292 PRINTS Casein kinase II regulatory subunit family signature 202 223 IPR000704 GO:0005956|GO:0019887
Aip05g00449 292 PRINTS Casein kinase II regulatory subunit family signature 224 245 IPR000704 GO:0005956|GO:0019887
Aip05g00449 292 PRINTS Casein kinase II regulatory subunit family signature 252 269 IPR000704 GO:0005956|GO:0019887
Aip05g00449 292 SMART CK_II_beta_2 105 288 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00449 Aip-Chr5 5039578 5042463 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00449 K03115 - gmx:100799304 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00449 05 5039578 5042463 Aip01g01301 01 37400279 37404185 PCT
Aip01g01308 01 37758545 37762918 Aip05g00449 05 5039578 5042463 PCT