Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01308 ATGTACAAAGAGAGAGAGAAAGGTGGTGGTGTTGGGTCGAAGACTAGTGCTACAACGACGGAGGTTGATCGAAAGAGAATCAACGATGCTCTCGATAAGCACCTACACCAACACCGTTCATCTGCTTCCACTTCCCTAAACCATCACACGCATAAGACCTCCAACAATTCCACCTCTCACCATCGTAATGAGGAATCTGAAACTGATAGCGAAGAATCAGATGTTAGTGGTTCTGAAGGGGATGACACTTCTTGGATTTCATGGTTTTGCAATTTGAGAGGAAATGAATTTTTTTGTGAAGTTGACGATGATTACATACAAGATGATTTCAACCTCTGTGGATTAAGCAGTCAAGTTCCTTACTATGATTATGCGCTTGATTTAATTTTGGATGTTGAATCCTCCCATGAAGACATGTTGACGGAGGAACAAAATGAATTAATTGAATCTGCTGCTGAGATGCTTTATGGTTTGATTCATGCCCGGTACATTTTGACAAGCAAGGGGTTGGCTACAATGCTAGATAAGTACAAGAGCTTCGACTTTGGCAGATGTCCAAGAGTTTACTGCTGTGGACAATCTTGTCTTCCGGTTGGTCAATCAGATATTCCTAGGGCAAGCACTGTCAAAATATATTGCCCCAAGTGTGAAGACATTTACTACCCACGCTCCAAGTATCAAGGTAATATGGATGGCGCGTATTTTGGAACCACATTTCCTCACCTCTTCTTGATGACTTACTCAAATCTGAAGCCGCAAAAGCCGTTGCAGTCACAGAGTTACGTTCCTAGAGTTTTTGGTTTCAAAGTTCACAAGCCCTGA 822 0.4221 MYKEREKGGGVGSKTSATTTEVDRKRINDALDKHLHQHRSSASTSLNHHTHKTSNNSTSHHRNEESETDSEESDVSGSEGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHEDMLTEEQNELIESAAEMLYGLIHARYILTSKGLATMLDKYKSFDFGRCPRVYCCGQSCLPVGQSDIPRASTVKIYCPKCEDIYYPRSKYQGNMDGAYFGTTFPHLFLMTYSNLKPQKPLQSQSYVPRVFGFKVHKP 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01308 273 PANTHER CASEIN KINASE II SUBUNIT BETA 1 272 IPR000704 GO:0005956|GO:0019887
Aip01g01308 273 Pfam Casein kinase II regulatory subunit 84 269 IPR000704 GO:0005956|GO:0019887
Aip01g01308 273 PRINTS Casein kinase II regulatory subunit family signature 84 100 IPR000704 GO:0005956|GO:0019887
Aip01g01308 273 PRINTS Casein kinase II regulatory subunit family signature 101 115 IPR000704 GO:0005956|GO:0019887
Aip01g01308 273 PRINTS Casein kinase II regulatory subunit family signature 156 177 IPR000704 GO:0005956|GO:0019887
Aip01g01308 273 PRINTS Casein kinase II regulatory subunit family signature 181 202 IPR000704 GO:0005956|GO:0019887
Aip01g01308 273 PRINTS Casein kinase II regulatory subunit family signature 203 224 IPR000704 GO:0005956|GO:0019887
Aip01g01308 273 PRINTS Casein kinase II regulatory subunit family signature 231 248 IPR000704 GO:0005956|GO:0019887
Aip01g01308 273 ProSitePatterns Casein kinase II regulatory subunit signature. 185 216 IPR000704 GO:0005956|GO:0019887
Aip01g01308 273 SMART CK_II_beta_2 84 269 IPR000704 GO:0005956|GO:0019887
Aip01g01308 273 SUPERFAMILY Casein kinase II beta subunit 82 272 IPR035991 GO:0005956|GO:0019887
Aip01g01308 273 MobiDBLite consensus disorder prediction 19 39 - -
Aip01g01308 273 MobiDBLite consensus disorder prediction 1 80 - -
Aip01g01308 273 Gene3D - 182 256 - -
Aip01g01308 273 PANTHER CASEIN KINASE II SUBUNIT BETA 1 272 - -
Aip01g01308 273 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 77 181 IPR016149 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01308 Aip-Chr1 37758545 37762918 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01308 K03115 - gmx:100793573 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01308 01 37758545 37762918 Aip01g01308 01 37758545 37762918 ECH
Aip01g01308 01 37758545 37762918 Aip05g00449 05 5039578 5042463 PCT