Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02838 ATGTCAGAAATTGACATGGCAGTTAGTAAACCCGAGATTATGCAGCCGTATATCTGGCTTCAGACACCAGATGGTGCAATAAAACAAGTGGAACAGGAAATTGCAATGTTTTGCCCTTTTATTTGTCAAGAAGTAATACAAAAAGGCACAGGATCTTCAAAGAACTGTGCAATATGTCTTCCTCAACGAGTCACCCCTACTATTTTGAGCTTAATACTTGATTATTGCCGATTTCATCAAGTACCAGGTCGCTCAAACAAGGAGCGGAAGTCTTATGATGAGAAATTCATGCGGATGGACACGAAGCAGTTATGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTGAAACCATTGGTTGATCTTACCAGCCGTACACTTGCTCGAATAATTGAAGGAAAATCCCCTGAGGAAATACGCGGCATATTTAATTTGCCAGATGATCTTACAGAGGAAAAGAAATTGGAGCCCTTGAAAAACACAACTGTTGATCCGAGGATCAGGCTTGGAACCGCTTATCCAAAGGAGATGCAAAATTCTAAGAATAAAAATAAAAACCGAAGAAGAAAAGAGCAACAGACGAGCTCTTCTTTGAAGGAAGCTTCTGAACTGAACAATAAGGTAGTCATAATATCTAATATCAAATTTGGCTTCAAGTTAAATTTGAAAAAACAAGTTCAGTTATTTACTATATATGTTCCAAGTGTTTATTGCTTTTTACTTCTAATAGGAGATAAATGGCAAACTGATGGAACTAATGGAGTTTCCGAGGCCTCTCAGTCTAATACAGAAGACAGCACTTTTGTTCCTAGAGAGTTTGATGATGGAGATATAGATGAGGAGATCGATCCTGCATTAGAGGAAAAACTTGACAGGTGGGGCTAG 885 0.3898 MSEIDMAVSKPEIMQPYIWLQTPDGAIKQVEQEIAMFCPFICQEVIQKGTGSSKNCAICLPQRVTPTILSLILDYCRFHQVPGRSNKERKSYDEKFMRMDTKQLCELTSAADSLQLKPLVDLTSRTLARIIEGKSPEEIRGIFNLPDDLTEEKKLEPLKNTTVDPRIRLGTAYPKEMQNSKNKNKNRRRKEQQTSSSLKEASELNNKVVIISNIKFGFKLNLKKQVQLFTIYVPSVYCFLLLIGDKWQTDGTNGVSEASQSNTEDSTFVPREFDDGDIDEEIDPALEEKLDRWG 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02838 294 PANTHER SKP1-LIKE PROTEIN 20 174 210 - -
Aip04g02838 294 PANTHER SKP1-LIKE PROTEIN 20 1 167 - -
Aip04g02838 294 PANTHER SKP1 174 210 IPR016897 GO:0006511
Aip04g02838 294 PANTHER SKP1 1 167 IPR016897 GO:0006511
Aip04g02838 294 Pfam Skp1 family, dimerisation domain 117 153 IPR016072 GO:0006511
Aip04g02838 294 MobiDBLite consensus disorder prediction 252 294 - -
Aip04g02838 294 MobiDBLite consensus disorder prediction 252 267 - -
Aip04g02838 294 Pfam Skp1 family, tetramerisation domain 17 80 IPR016073 GO:0006511
Aip04g02838 294 SUPERFAMILY POZ domain 16 80 IPR011333 -
Aip04g02838 294 MobiDBLite consensus disorder prediction 167 199 - -
Aip04g02838 294 Gene3D Potassium Channel Kv1.1; Chain A 12 162 IPR011333 -
Aip04g02838 294 SUPERFAMILY Skp1 dimerisation domain-like 90 160 IPR036296 GO:0006511
Aip04g02838 294 SMART skp1_3 15 116 IPR001232 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02838 Aip-Chr4 119533547 119535544 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02838 - - ahf:112744136 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02838 04 119533547 119535544 Aip04g02838 04 119533547 119535544 ECH
Aip02g00078 02 1452087 1457453 Aip04g02838 04 119533547 119535544 ECH
Aip04g02838 04 119533547 119535544 Aip02g00078 02 1452087 1457453 PCT