Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02726 ATGGCAGAAGCAAAACTAAGGTATGCTGTTGTTACAGGGTCAAACAGAGGGATAGGATTTGAGACAGTTAAGGAATTGGCCTCAAATGGAATCAAGGTGGTTCTCACAGCAAGAGATGAGAAGAAAGGCAATGAAGCCATTGAAAAATTGAAAGATTTTGGTCTCTCTGACTTTGTGGTTCTTCACCAGCTTGATGTCACTGACCATGTTAGCATTTCATCTTTGGTACAATTTGTTAGCACACACTTTGGGAGACTTGATATATTGGTGAACAATGCAGGAATAAGTGGTGTGAATCCAGATGAAAAGGGGGAAGCAACAATCATCTGGGAAGAACTGACTCAAACTTATGAAATGGCTGAAAAGTGCATATTGACAAATTACTATGGTGCTAAGGACACAACTGAGGCATTTCTACCCCTTCTCAAGTTATCCGATTCACCTATTATCGTTAATGTTTCCTCGCGAGGAGGATTGTTAAAGCACATATCAAACAAATGGGCAAAAGGGGTGCTAGATGATGATGAGAATCTAACAGAAGAGAGAATAGATGAGGTGTTGAAGGAGTTTATGGAAGACTTCAAAGCAGGTTTGATAGAAAGGAATGGCTGGCCAACCTTGTTATCTGCAAATAGAGTATCAAAAGCAGCATTGAATTCTTACACAAGAATTCTGGCAAAGAAGCATCCAAACTTGTGCATCAATTGTCTCTGCCCTGGTTTTGTGAAAACAGACATAAATAGGAACACTGGAATCTTATCTGTCACTGAAGGTGCTGCAAGTGTTGTCAGATTAGCACTTCTATCTCATGGTTCCCCTTCTGGCCTTTTCTTTATTAGGCAAGAATTGTCAACTTTTTAA 861 0.3984 MAEAKLRYAVVTGSNRGIGFETVKELASNGIKVVLTARDEKKGNEAIEKLKDFGLSDFVVLHQLDVTDHVSISSLVQFVSTHFGRLDILVNNAGISGVNPDEKGEATIIWEELTQTYEMAEKCILTNYYGAKDTTEAFLPLLKLSDSPIIVNVSSRGGLLKHISNKWAKGVLDDDENLTEERIDEVLKEFMEDFKAGLIERNGWPTLLSANRVSKAALNSYTRILAKKHPNLCINCLCPGFVKTDINRNTGILSVTEGAASVVRLALLSHGSPSGLFFIRQELSTF 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02726 286 Gene3D - 3 286 - -
Aip04g02726 286 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Aip04g02726 286 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Aip04g02726 286 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Aip04g02726 286 PRINTS Glucose/ribitol dehydrogenase family signature 211 230 IPR002347 -
Aip04g02726 286 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
Aip04g02726 286 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 286 - -
Aip04g02726 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Aip04g02726 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Aip04g02726 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 211 230 IPR002347 -
Aip04g02726 286 CDD carb_red_PTCR-like_SDR_c 7 278 IPR045313 GO:0016616
Aip04g02726 286 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 268 IPR036291 -
Aip04g02726 286 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 4 286 - -
Aip04g02726 286 Pfam short chain dehydrogenase 8 161 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02726 Aip-Chr4 116920778 116922995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02726 9 160 Miscellaneous Gene Families AT2G29150 34.416 3.68e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02726 K15095 - gmx:100527070 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02726 04 116920778 116922995 Aip04g02726 04 116920778 116922995 ECH
Aip04g02726 04 116920778 116922995 Aip02g00641 02 9602198 9604917 PCT
Aip02g00642 02 9606810 9609183 Aip04g02726 04 116920778 116922995 PCT