Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02616 ATGGGTTTGATTTCTGGGATGTTTCTTGGGATGGTATTTGGCATAGCATTGATGGCAGGGTGGCATCGCATGATGAGATACCGAAGCGCCAAAAGGACTGCAAAGGCAGTTGATGTTAAACTCCTTGGATCCCTAAACAGAGATGATGTGAAGAGACTTTGTGGTGATAACTTTCCTGAATGGATATCTTTTCCTGTATATGAGCAGGTGAAATGGCTAAACAAGCAGTTGTCTAAACTTTGGCCATTTGTGGCAGATGCAGCATCAATGGTCATAAGAGAATCTGTTGAACCAATATTGGAACAGTATAGACCGCCGGGTATTAGTTCATTGAAGTTCAGTAAATTGTCCCTTGGAAGTGTCGCTCCAAAGATTGAAGGTATTCGTGTTCAGCGTCTCAAGAAAGGCCAAATAACAATGGACATTGATTTCCGTTGGGGTGGTGATCCCAATATTGTTTTGGCTGTTGATGCAACAATTGCATCCATCCCAATTCAGTTGAAGGATCTCCAAGTTTTCACCGTTATCCGTGTCATATTCCAACTTTGTGAAGACATGCCATGCATTTCTGCTGTTGTTGTTGCTCTACTTGCTGAGCCGAAGCCTAGAATTGATTACATTCTGAAGGCTGTTGGTGGAAGTTTGACAGCACTGCCTGGAGTTTCAGATATGATTGATGATACTGTGAACTCAATTGTTACTGATATGCTACAATGGCCTCATAGGATTGTTGTTCCACTTGGCGGTGTACCTGTTGATACAAGTGAACTGGAGCTTAAACCCTGTGGAAGGGTTACAGTAACGGTGGTTCAAGCAAATGATTTAAAGAACATGGAAATGATTGGGAAATCTGATCCTTATGTAGCTCTGCATATTCGACCAATATTTAAGGTTAAAACCAAGGTTGTTGATAACAACCTGAATCCTGTTTGGGATGAGAAATTTGACCTGATTGCAGAAGACCTGGAGACTCAGTCCATTATTTTTGAGGTTTTCGATGAAGACATTGGGCAAGATAAGCGATTAGGAGTAGCCAAATTTCCACTTAGTGAATTGGAGGAAGAAACTGAAAAGGAGCAGGAGTTGAGGTTGCTAGCGTCACTTGATACAAAGGTTAAAGACAAGAAGGATCGAGGAACCTTGACAGTAAAGGTCTTTTATCATCATTTTAACAAGGAAGAGCAATTGGCTGCATTAGAAGAAGAGAAAAAGGCAATAGAAGAAATGCAGAAACGTAGAGATGAGGGAGTTGTAGGGACTACAAAGCAGACACTAGATAGAGCAGCATCAGTAGCTGGAACCGGTGTTGGAATGGTTGGTAGTGGTGTCGCCACTGGCGTTGGAGTTGTCGGCAGTGGCGTCAGTGCTGGAGCAGGGCTTGTCGGCATTGGAGGTGGCAGTGGATCCGGACAAGGCAGCGGTGCTAGTCCCGGCAGCAGCGGCTCTGGCATTGCTGGTGGTTTCATTGGCAATGTTGGTAGTGGACTAAGCAAGGCAGGAAAGTTTGTAGGCAGAACATTTGCAGGGCCAAGTGGAAGAAAAAGTGGTTCAACTACGCCTATCAGCAATTATGAGGAGAGTGGGGGTGGTGCAAAGCCTAGGCCTGTGTGA 1611 0.4432 MGLISGMFLGMVFGIALMAGWHRMMRYRSAKRTAKAVDVKLLGSLNRDDVKRLCGDNFPEWISFPVYEQVKWLNKQLSKLWPFVADAASMVIRESVEPILEQYRPPGISSLKFSKLSLGSVAPKIEGIRVQRLKKGQITMDIDFRWGGDPNIVLAVDATIASIPIQLKDLQVFTVIRVIFQLCEDMPCISAVVVALLAEPKPRIDYILKAVGGSLTALPGVSDMIDDTVNSIVTDMLQWPHRIVVPLGGVPVDTSELELKPCGRVTVTVVQANDLKNMEMIGKSDPYVALHIRPIFKVKTKVVDNNLNPVWDEKFDLIAEDLETQSIIFEVFDEDIGQDKRLGVAKFPLSELEEETEKEQELRLLASLDTKVKDKKDRGTLTVKVFYHHFNKEEQLAALEEEKKAIEEMQKRRDEGVVGTTKQTLDRAASVAGTGVGMVGSGVATGVGVVGSGVSAGAGLVGIGGGSGSGQGSGASPGSSGSGIAGGFIGNVGSGLSKAGKFVGRTFAGPSGRKSGSTTPISNYEESGGGAKPRPV 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02616 536 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 529 - -
Aip04g02616 536 MobiDBLite consensus disorder prediction 511 525 - -
Aip04g02616 536 ProSiteProfiles C2 domain profile. 246 362 IPR000008 -
Aip04g02616 536 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 261 390 IPR035892 -
Aip04g02616 536 Pfam C2 domain 263 362 IPR000008 -
Aip04g02616 536 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 248 IPR031468 GO:0008289
Aip04g02616 536 PRINTS C2 domain signature 280 292 IPR000008 -
Aip04g02616 536 PRINTS C2 domain signature 305 318 IPR000008 -
Aip04g02616 536 PRINTS C2 domain signature 327 335 IPR000008 -
Aip04g02616 536 CDD C2 265 348 - -
Aip04g02616 536 MobiDBLite consensus disorder prediction 503 536 - -
Aip04g02616 536 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 529 IPR045050 GO:0008289
Aip04g02616 536 Coils Coil 389 412 - -
Aip04g02616 536 Gene3D C2 domain 260 419 IPR035892 -
Aip04g02616 536 SMART C2_3c 264 361 IPR000008 -
Aip04g02616 536 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 247 IPR039010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02616 Aip-Chr4 114581562 114588166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02616 265 362 Lipid Metabolism Gene Families AT4G00700 32.653 1.15e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02616 - - mtr:MTR_7g075790 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02616 04 114581562 114588166 Aip04g02616 04 114581562 114588166 ECH
Aip04g02616 04 114581562 114588166 Aip02g02720 02 102847933 102855283 PCT