Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02720 ATGGGGTTGATTTCTGGGATTTTCATGGGTATCTTGTTTGGCATAGCATTGATGGCAGCATGGGAGCGCATGATGAGGTACCGAAGCGCCAAGCGAATTGGAAAGGCGGCTGACATCAAAATCCTTGGATCCCTTAACAGAGAAGATCTAAAGAAACTTTGTGGCGATAGTTTGCCGGAGTGGATATCTTTTCCTGCATATGAGCAGGTGAAATGGCTAAACAAGGAGCTGTCCAAACTTTGGCCATTTGTGGCAGATGCAGCAACTTTGGTTATCAGAGAATCTGTTGAACCACTACTGGAAGATTACAGACCTCCTGGAATTACTTCTTTGAAGTTCAGCAAGTTGTCACTTGGAAATGTTGCTCCAAAAATTGAAGGTATTCGAGTTCAAAGTCTTACCAAAGGTCAAATTATAATGGACATTGATTTCCGTTGGGGTGGTGATCCCAGTATTATTCTTGCTGTTGAAGCTGCACTTGTTGCATCAATCCCTATACAGTTGAAGGATCTACAGGTTTTCACCATTATCCGAGTTATATTCCAACTTGCTGAAGAGATCCCTTGCATTTCTGCTGTCGTTGTTGCGTTACTTGCTGAGCCGGAACCCAAAATTGATTACACTTTGAAAGCTGTTGGTGGAAGTTTGACAGCAATTCCCGGAATTTCAGATATGATTGATGATACAGTGAAGTCAATTGTTACTGATATGCTCCAATGGCCTCATAGGATTGTTGTTCCCCTTGGCGGCATACCTGTTGATACTAGTGAACTGGAGCTTAAACCACAGGGAAAGCTTACAGTCACCATAGTCAAAGCGAACGAGTTAAAGAATATGGAAATGATTGGAAAATCAGATCCTTATGTCGTTTTGTTTATTCGACCCTTATTTAAGGTTAAAACCAAGGTTGTTGACAACAACTTGAATCCTGTTTGGAATCAGACATTTGATGTGATTGTAGAAGACAAGGAGACACAGTCACTTATTCTTGAGGTTTTTGATAAAGATATTGGACAAGATAAGCGATTGGGAGTAGTAAAGTTACTCCTCAATGATCTAGAAGCAGAAACTGAAAAGGATCTTGAATTGAGGCTGTTGCCATCTCTCGATACATTGAAGGTTAAAGACAAGAAGGATCGAGGAACCTTGTTTATAAAGGTCTTTTATCACCAATTCAACAAGGAAGAGCAATTGGCTGCACTAGAAGCCGAGAAAGAGATACTAGAAACGAGGAAGAAACTGAAGGCGGAGGGAGTGATAGGAAGCACGATGGACGCGCTAGATGGAGCAGCGTCGATAGTAGGGTCTGGTGTTGGTTTTGTTGGTTCTGGTGTTGTTGCCGGCGCAGGGCTTGTTGGAAGCGGTCTTGGCGCTGGAGCCGGACTTGTTGGAAGTGGTATTGGTGCCGGAGCTGGGTTTGTTGGTAGTGGTCTTGGAGCAGTTGGTAGCGGCTTTGCTAAAGCCGGGAAGTTCATGGGGAGGACAATCACAGGTGGCCATAGTGCTTCCCGAAGGAGCGGCTCGTCGACACCGGTGAATAATGGACAGGAGAGTGGTGGTGGTGCGAAGCCTTTGTAA 1578 0.4423 MGLISGIFMGILFGIALMAAWERMMRYRSAKRIGKAADIKILGSLNREDLKKLCGDSLPEWISFPAYEQVKWLNKELSKLWPFVADAATLVIRESVEPLLEDYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFTIIRVIFQLAEEIPCISAVVVALLAEPEPKIDYTLKAVGGSLTAIPGISDMIDDTVKSIVTDMLQWPHRIVVPLGGIPVDTSELELKPQGKLTVTIVKANELKNMEMIGKSDPYVVLFIRPLFKVKTKVVDNNLNPVWNQTFDVIVEDKETQSLILEVFDKDIGQDKRLGVVKLLLNDLEAETEKDLELRLLPSLDTLKVKDKKDRGTLFIKVFYHQFNKEEQLAALEAEKEILETRKKLKAEGVIGSTMDALDGAASIVGSGVGFVGSGVVAGAGLVGSGLGAGAGLVGSGIGAGAGFVGSGLGAVGSGFAKAGKFMGRTITGGHSASRRSGSSTPVNNGQESGGGAKPL 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02720 525 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 264 391 IPR035892 -
Aip02g02720 525 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Aip02g02720 525 PRINTS C2 domain signature 281 293 IPR000008 -
Aip02g02720 525 PRINTS C2 domain signature 306 319 IPR000008 -
Aip02g02720 525 PRINTS C2 domain signature 328 336 IPR000008 -
Aip02g02720 525 Pfam C2 domain 264 360 IPR000008 -
Aip02g02720 525 Gene3D C2 domain 259 417 IPR035892 -
Aip02g02720 525 CDD C2 266 359 - -
Aip02g02720 525 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 520 - -
Aip02g02720 525 MobiDBLite consensus disorder prediction 499 517 - -
Aip02g02720 525 ProSiteProfiles C2 domain profile. 247 363 IPR000008 -
Aip02g02720 525 Coils Coil 391 413 - -
Aip02g02720 525 SMART C2_3c 265 362 IPR000008 -
Aip02g02720 525 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 520 IPR045050 GO:0008289
Aip02g02720 525 MobiDBLite consensus disorder prediction 496 525 - -
Aip02g02720 525 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02720 Aip-Chr2 102847933 102855283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02720 249 363 Lipid Metabolism Gene Families AT3G61300 31.897 1.43e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02720 - - gmx:100777838 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02720 02 102847933 102855283 Aip02g02720 02 102847933 102855283 ECH
Aip04g02616 04 114581562 114588166 Aip02g02720 02 102847933 102855283 PCT