Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02583 ATGACTGCGTCTGAGAACTCTCTAACTTTATTAAACAAACACGGAAAGTGGAAAGCAGGAAATTGTCTTTGCAACTACTGCCATTTCTTCCACTTTCATCAACATTTATTTCACTCACACGCTTCAAACGACGTCGTTTTGCTTAACATTCTCATGGCCCTCTTGAAGACCTCCACCACTCTCTCCTTCAGAGCAACCGCTTTTCCGCTTTTACCATCCGATGTCACCCATGGCCATACCACCAACACCAGGAAGTTGCATTGGAAGCCTACTCAAGCTGCTTTGACATCCAGTTTCCACCTTCCAATGCGTAGCTTTGAGGCTAAGAACAGGACTTCCACAGATGACGTAAAGCGTCTGAGATTGATAACTGCCATTAAGACACCATACCTACCCGATGGTCGCTTTGATCTTGAAGCATATGATACCTTAGTAAATTTGCAGATTGAAAATGGAGTTGAAGGTGTTATTGTTGGTGGCACAACTGGAGAAGGCCAATTAATGAGCTGGGACGAACACATAATGCTTATTGGGCACACAGTCAACTGTTTCGGAGTGAAAATCAAGGTTATAGGAAACACCGGAAGCAACTCCACAAGGGAAGCAATCCATGCCACAGAGCAGGGTTTTGCTGTTGGGATGCACGCTGCCCTTCACATAAACCCTTACTACGGCAAAACCTCCTTGAATGGTTTGATTTCTCACTTCAATACCGTGCTTCCCATGGGGCCTACCATCATATACAATGTGCCTTCAAGGACCAGTCAAGACATTCCTCCACAGGTGATTCAAACCTTAGCACAGAGTGCGAGTTTAGCCGGTGTCAAGGAATGTATGGGAAATGACAGGATCAAACAATATACAGATAATGGTATTGTTGTGTGGAGCGGGAATGATGACCAATGCCATGATGCTAGATGGGGTTACGGGGCGACAGGAGTGATATCTGTCGCAAGCAACCTGGTTCCCGGTTTAATGCGAGAACTCATAATTGGTGGTGAGAATCCGGCGCTGAATTCTAAGCTCATGCCTCTTGTTGAATGGCTTTTTTGCGAGCCAAACCCCATCGGTTTGAACACAGCTCTTGCTCAACTCGGAGTTGCTCGGCCGGTTTTCAGGCTACCATATGTACCTCTCCCTTTGAAGAAGCGGATGGAATTTGTCAATTTGGTGAAGGGAATCGGTCGAGAGCACTTTATTGGAGACAAAGATGTTCAGGTTCTTGATGATAATGACTTTATCTTAATTGGTCGTCATTAA 1260 0.4532 MTASENSLTLLNKHGKWKAGNCLCNYCHFFHFHQHLFHSHASNDVVLLNILMALLKTSTTLSFRATAFPLLPSDVTHGHTTNTRKLHWKPTQAALTSSFHLPMRSFEAKNRTSTDDVKRLRLITAIKTPYLPDGRFDLEAYDTLVNLQIENGVEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGVKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLNGLISHFNTVLPMGPTIIYNVPSRTSQDIPPQVIQTLAQSASLAGVKECMGNDRIKQYTDNGIVVWSGNDDQCHDARWGYGATGVISVASNLVPGLMRELIIGGENPALNSKLMPLVEWLFCEPNPIGLNTALAQLGVARPVFRLPYVPLPLKKRMEFVNLVKGIGREHFIGDKDVQVLDDNDFILIGRH 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02583 419 Gene3D Aldolase class I 113 419 IPR013785 -
Aip04g02583 419 ProSitePatterns Dihydrodipicolinate synthase signature 2. 248 278 IPR020625 GO:0016829
Aip04g02583 419 CDD DHDPS 121 391 IPR005263 GO:0008840|GO:0009089
Aip04g02583 419 Pfam Dihydrodipicolinate synthetase family 121 392 IPR002220 GO:0016829
Aip04g02583 419 ProSitePatterns Dihydrodipicolinate synthase signature 1. 155 172 IPR020624 GO:0016829
Aip04g02583 419 PANTHER 4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE, CHLOROPLASTIC 81 418 - -
Aip04g02583 419 SMART DHDPS_2 119 395 IPR002220 GO:0016829
Aip04g02583 419 TIGRFAM dapA: 4-hydroxy-tetrahydrodipicolinate synthase 122 386 IPR005263 GO:0008840|GO:0009089
Aip04g02583 419 PANTHER DIHYDRODIPICOLINATE SYNTHASE 81 418 IPR002220 GO:0016829
Aip04g02583 419 PRINTS Dihydrodipicolinate synthase signature 243 260 IPR002220 GO:0016829
Aip04g02583 419 PRINTS Dihydrodipicolinate synthase signature 188 206 IPR002220 GO:0016829
Aip04g02583 419 PRINTS Dihydrodipicolinate synthase signature 220 236 IPR002220 GO:0016829
Aip04g02583 419 PRINTS Dihydrodipicolinate synthase signature 152 173 IPR002220 GO:0016829
Aip04g02583 419 SUPERFAMILY Aldolase 122 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02583 Aip-Chr4 113921766 113924721 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02583 K01714 - gmx:100788930 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02583 04 113921766 113924721 Aip04g02583 04 113921766 113924721 ECH
Aip04g02583 04 113921766 113924721 Aip02g02678 02 102274197 102276364 PCT