Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02152 ATGGCAACTTGGGTTTTATCAGAATGTGGCTTAAAGCCTCTTCCACCAACATTCCCTAGACCCAAAACTGGTATTGTTAATTCTAACTCTAACCCTTCAAAGGTTAGATTTTTAAGCACAAAAAACAATGGTGTTTCTTTTTCAGATCCAAAGTTTCAATCCAGAAGAAGCTTTACAAGTTCTAGCTTCAGGGATAGAAACTTTGGGTTAAGGGTTAGTGCCCCTTTGAGGGTTAGCCCTATTGAAGAAGAGGAAGTGAAGAAAGATGTGAAAATCAATGGTGGTGGTGTTGAGAATGAAGTTGGTGAATTTGACCCTGGAGCACCACCACCATTCAATTTGGCTGATATTAGGGCAGCAATACCAAAGCATTGTTGGGTGAAAGATCCATGGAAGTCAATGAGCTATGTAGCCAGGGATGTAATTGTTGTTCTTGGATTGGCTGCTGGTGCTGCTTACCTCAACAGCTGGCTTGTTTGGCCTCTTTATTGGGCTGCTCAGGGGACCATGTTCTGGGCACTTTTTGTTCTTGGCCATGATTGTGGCCATGGAAGCTTTTCAAACAATCACAAACTAAACAGTGTTGTTGGACACCTGCTACATTCTTCAATTCTAGTTCCTTATCATGGGTGGAGAATCAGTCACAGGACTCATCATCAAAATCATGGCCATGTTGAAAATGATGAATCTTGGCACCCGTTATCTGAGAAAATCTTTAGGAGCCTTGACACCATGACTCGGACTTTAAGATTTACTGTTCCTTTTCCACTGCTTGCATATCCTGTGTACCTTTTTAGTAGGAGTCCAGGGAAGACTGGTTCTCACTTCCATCCTGATAGTGACTTGTTTGTTCCAAGTGAAAGAAACGATGTTATCACATCTACAGCTTGTTGGTCTGCAATGGTAGCAATTCTTGTAGGATTGGGTTTTCTAATGGGTCCAATTCCATTGCTTAAGCTTTATGGGGTACCTTATCTTATCTTTGTTATGTGGTTGGATCTTGTTACATACTTGCATCATCATGGCCATGAAGACAAACTACCGTGGTATCGCGGAAAGGTAGATATATTGATAAGAAAAATATCTATGCCTGGGGACATAATTTCTCTTTCAgtggagacttgcatacagtttatctttatgtga 1146 0.4005 MATWVLSECGLKPLPPTFPRPKTGIVNSNSNPSKVRFLSTKNNGVSFSDPKFQSRRSFTSSSFRDRNFGLRVSAPLRVSPIEEEEVKKDVKINGGGVENEVGEFDPGAPPPFNLADIRAAIPKHCWVKDPWKSMSYVARDVIVVLGLAAGAAYLNSWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIFRSLDTMTRTLRFTVPFPLLAYPVYLFSRSPGKTGSHFHPDSDLFVPSERNDVITSTACWSAMVAILVGLGFLMGPIPLLKLYGVPYLIFVMWLDLVTYLHHHGHEDKLPWYRGKVDILIRKISMPGDIISLSVETCIQFIFM 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02152 381 CDD Delta12-FADS-like 128 351 - -
Aip04g02152 381 PANTHER OMEGA-6 FATTY ACID DESATURASE, CHLOROPLASTIC 54 354 - -
Aip04g02152 381 PANTHER TEMPERATURE-SENSITIVE SN-2 ACYL-LIPID OMEGA-3 DESATURASE (FERREDOXIN), CHLOROPLASTIC 54 354 - -
Aip04g02152 381 Pfam Domain of unknown function (DUF3474) 1 149 IPR021863 GO:0016717
Aip04g02152 381 Pfam Fatty acid desaturase 156 355 IPR005804 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02152 Aip-Chr4 100344686 100348110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02152 1 353 Lipid Metabolism Gene Families AT3G11170 66.573 1.86e-168 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02152 K10257 - gmx:100305351 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02152 04 100344686 100348110 Aip04g02152 04 100344686 100348110 ECH
Aip04g02152 04 100344686 100348110 Aip07g01486 07 25840380 25843512 ECH