Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01785 ATGGAACGCAAGAAAACGCTGACGATGAATTGGGCCGGCCTCAAAGACGACAACGAGGACGAGCACTTCTTCGAGATCACTAACCGCCTCAACACGATTTGTCACCGTGACTTGGCTTCTTCCTCCGATGACGATGAGGAATTCGAAGACCCCCGTACATCGTTCTCCGCAACCATGTCTACCACACAATATCGAACATTCTCACGAATGTTTACAAGAACAGCCTCCATTCAACCTACCCCCAATTACGATATTTGGATGGCTGCACCAGGATCCATCACAGAAAGACGAAGAAGATTACTTGGAAGCATGGGATTGGATGAAAACAAAGTCTCATTAAAGGTCACCAGTTTCGCTCTTGATCGTGCTGTCACCAAGAAGCTCGATAAAATGAATAAGAAGGCTCCTATCCCTATTCCTGTTCCGCCTCGTTCTACAACAAGGGCCCCACGTTTCTTAGAAGAAGTGGCTGTCGGTTCCTCTCCTTCCCTTCCTTCCATTTCAGAAGAGCAAGAAACGAAGCATGCCCCTGTTTTGTTCTGCTTGGTGCGATCACGTTCCGAAGGGGATATTGAGATGATTTCCATGGCGAAAGCAAGGAAAGAGGAGTTCATTGGTAAGGTTTCGAAGCAGCGATTAACAAGAACCTCGTCGGAGATAGTAATGCCTCGTGCTAAGATGGTCCCTGCCGCAATGGTCCTGAAGGATCCTGCGGAAGTGAAGGCAAGGGTGGCCAATCATAACCGGAAGTCTTCGACGACGGCGGGGGCAGGAGTGGGAGCTTTCTTTCTGATAAAGAATTTGGATACCGGGAAGGAATTTATTGTGAAGGAATATAGCGAAGACGGAATGTGGAATAAACTAAGTGATTTGCAGACGGGGAAGCAGTTAACGATGGATGAGTTTGAGAAAAGTGTGGGGCATTCGAAAATTGTCAAGGAAATGATGAAGCGAGCCAAGGTGGGGAAGAAGGAAGGTATAGGAAAGATATTATCATCGAGTTCGATTTCAAAAAGTTTAAAATTAAGTAAGAAAAAGGGAGCTTCATTCATAAAGAATGTGAAAGGTGCTGCAAGTAAAAGTTTTGGCGGCGAGAAGGAACTTAAAGAAGCTGGAGGAATTCTATCACAACCAGTGTCGGCAGAATCGAAAGCAACACAACAAGGGAAGAATGATTGGGTGAAAGTGCGACAAATCGGAAAGTCAGAGAAGGAGCTTTCGGCATTGCATTTGTGTCAAGAGTTTCAAGCACATGAAGGAGGGATTTCGATCATAAAGTTTAGTTTGGATGGAAGGTTTTTGGCAAGTGGCGGAGAAGATAAAGTAATTCATGTGTGGGAAGTACAAGAATGCGGTCTTACGCCATCTATACCAGGGCAAACAGAGGCTCCACCAGACAAGAAGAAAAGAGGGAAAGGGAGCTCAATTCCAGATTGGGTACAGGTCCCTGAGTTTGTTTTTAACCTTTCGGAGAAGCCATATTGCTCTTTTAACGGTCATTTGGATGAAGTCTTGGATTTGTCCTGGTCCAAATCTCAATTACTTCTATCCTCTTCGATGGATAAAACAGTGAGATTATGGGACCTAGAAACTAAAGCATGCTTGAAGTTTTTTGCACACAACGACTATGTAACTTGCGTACAGTTCCATCCTATAGACGAAAATTATTATATTAGTGGCTGCCTTGATGCTAAGGTTAGAGTATGGAACATCCCTGCACGTCAGGTTGTGGATTGGACAGACATCGAAGAAATGGTTACTGCAATTACTTACACCCCAGATGGCCATGGTGCTATAATTGGTACGATTAAAGGGGATTGCCGCACTTACAAAGTACAAGATCACCAGTTAAGTGACCCAGGGACAATTAACATCACACAGAAGAAGAAATCTCAGATTAAAAAGATTACTGGTTTCCAATTTGCCCCAAGAAACCCATCAGAAATTCTTATTACTTCAGGCGATTCTAGGATAAGAATAGTAGACTGTTCGAAAGTCCTTCACAAGTTCAGAGGTTTTCGAAATGGAAATAGCCAAATTGCAGCTTCATTTAGTCCAAATGGAAGATACATAATCAGTGCAAGTGAGGATTCTCAAGTATTTGTTTGGAAATATGAAGAGCCTCGTAATGCAAACGCTGCAAAAGCTAAGACTATAACCGTGACCCAATCTTATGAACAGTTCCAATGTAAAGATGTAACAGTAGCAATACCATGGCCTTGTACAATTAAGAGTGATCCATCACAAGCGCCAGTGATTAACAACGCAAAAAAGAATACAAAACGCGGCGGGGATGATAATAAGAAAGCGTTGCCTCCTCTTCCAAAGAAAAACAATAACCACGGAAATAATGGAACTGATGGTACCGTAGCCTCAGCCGCACCGGATCACGACTCTTCAGCAATTTCAAACGTAGAATCAGGGCTTGGAGATTCATCTAATAAAGTTGAGGCCACAGTAGAAAGTGATGGCACTTCTCAAGAAGAAGGTGAGGCAGTTTCTCGGGATAATTCAGGATTAGGTGATTCAGTTGCATCAAGTTCTGCACCAAATGGTCATGGCGATTCATCAACTGCTACAACTGCTGCTACTGCATCTTCAAATTTTTTGTTAAGTGATGTTAGCAACAACAACCCAGCTACAATGAATCCTTCAGCATGGGGCTTGGTGATTGTGACAGCTGGCTTTGAAGGTGAAATAAGGTGTTACCAAAACTTTGGGTTGCCAAAAAAATTGGGGCTTCAAGCCAATCTTTTCGGAGGCCCAACATAA 2772 0.4343 MERKKTLTMNWAGLKDDNEDEHFFEITNRLNTICHRDLASSSDDDEEFEDPRTSFSATMSTTQYRTFSRMFTRTASIQPTPNYDIWMAAPGSITERRRRLLGSMGLDENKVSLKVTSFALDRAVTKKLDKMNKKAPIPIPVPPRSTTRAPRFLEEVAVGSSPSLPSISEEQETKHAPVLFCLVRSRSEGDIEMISMAKARKEEFIGKVSKQRLTRTSSEIVMPRAKMVPAAMVLKDPAEVKARVANHNRKSSTTAGAGVGAFFLIKNLDTGKEFIVKEYSEDGMWNKLSDLQTGKQLTMDEFEKSVGHSKIVKEMMKRAKVGKKEGIGKILSSSSISKSLKLSKKKGASFIKNVKGAASKSFGGEKELKEAGGILSQPVSAESKATQQGKNDWVKVRQIGKSEKELSALHLCQEFQAHEGGISIIKFSLDGRFLASGGEDKVIHVWEVQECGLTPSIPGQTEAPPDKKKRGKGSSIPDWVQVPEFVFNLSEKPYCSFNGHLDEVLDLSWSKSQLLLSSSMDKTVRLWDLETKACLKFFAHNDYVTCVQFHPIDENYYISGCLDAKVRVWNIPARQVVDWTDIEEMVTAITYTPDGHGAIIGTIKGDCRTYKVQDHQLSDPGTINITQKKKSQIKKITGFQFAPRNPSEILITSGDSRIRIVDCSKVLHKFRGFRNGNSQIAASFSPNGRYIISASEDSQVFVWKYEEPRNANAAKAKTITVTQSYEQFQCKDVTVAIPWPCTIKSDPSQAPVINNAKKNTKRGGDDNKKALPPLPKKNNNHGNNGTDGTVASAAPDHDSSAISNVESGLGDSSNKVEATVESDGTSQEEGEAVSRDNSGLGDSVASSSAPNGHGDSSTATTAATASSNFLLSDVSNNNPATMNPSAWGLVIVTAGFEGEIRCYQNFGLPKKLGLQANLFGGPT 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01785 923 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 914 - -
Aip04g01785 923 SMART WD40_4 408 447 IPR001680 GO:0005515
Aip04g01785 923 SMART WD40_4 626 662 IPR001680 GO:0005515
Aip04g01785 923 SMART WD40_4 490 528 IPR001680 GO:0005515
Aip04g01785 923 SMART WD40_4 531 570 IPR001680 GO:0005515
Aip04g01785 923 SMART WD40_4 572 611 IPR001680 GO:0005515
Aip04g01785 923 SMART WD40_4 663 704 IPR001680 GO:0005515
Aip04g01785 923 ProSitePatterns Trp-Asp (WD) repeats signature. 515 529 IPR019775 -
Aip04g01785 923 Gene3D - 399 737 IPR015943 GO:0005515
Aip04g01785 923 Pfam WD domain, G-beta repeat 413 446 IPR001680 GO:0005515
Aip04g01785 923 Pfam WD domain, G-beta repeat 534 570 IPR001680 GO:0005515
Aip04g01785 923 Pfam WD domain, G-beta repeat 493 528 IPR001680 GO:0005515
Aip04g01785 923 Pfam WD domain, G-beta repeat 666 704 IPR001680 GO:0005515
Aip04g01785 923 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 415 449 - -
Aip04g01785 923 ProSiteProfiles Trp-Asp (WD) repeats profile. 497 537 IPR001680 GO:0005515
Aip04g01785 923 PRINTS G protein beta WD-40 repeat signature 434 448 IPR020472 -
Aip04g01785 923 PRINTS G protein beta WD-40 repeat signature 515 529 IPR020472 -
Aip04g01785 923 PRINTS G protein beta WD-40 repeat signature 557 571 IPR020472 -
Aip04g01785 923 PANTHER WD REPEAT DOMAIN 44 7 914 IPR040324 -
Aip04g01785 923 ProSitePatterns Trp-Asp (WD) repeats signature. 434 448 IPR019775 -
Aip04g01785 923 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 537 571 - -
Aip04g01785 923 MobiDBLite consensus disorder prediction 796 860 - -
Aip04g01785 923 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 449 IPR001680 GO:0005515
Aip04g01785 923 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 497 531 - -
Aip04g01785 923 MobiDBLite consensus disorder prediction 456 475 - -
Aip04g01785 923 ProSiteProfiles Trp-Asp (WD) repeats profile. 537 571 IPR001680 GO:0005515
Aip04g01785 923 ProSiteProfiles Trp-Asp (WD) repeats profile. 683 713 IPR001680 GO:0005515
Aip04g01785 923 SUPERFAMILY WD40 repeat-like 409 709 IPR036322 GO:0005515
Aip04g01785 923 MobiDBLite consensus disorder prediction 744 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01785 Aip-Chr4 75499208 75503629 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01785 415 779 Miscellaneous Gene Families AT5G08390 23.760 4.47e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01785 K20241 - gmx:100793299 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01785 04 75499208 75503629 Aip02g01989 02 86090429 86095323 PCT