Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip04g01417 | ATGCCGCCGGCTCTGATGAACCCGCTGATGCCGCCGCCGCCACCTCCGTCGGTGTCGGTGTCCGCGCCGCCGGAGCTTGAAGGCTCCGACGATGTTTCCGGGAGATCGGTGACTCAAAAGAGGCGATTCGGTGATCTGAGAGGGTTGCAGTGGCGTGTTGATCTTGGGGTTTTGCCTTCAGAGTCTTCAACTTCCATTGATGATCTTCGTAGGGTCACCGCTGACTGTAGAAGGAGGTATGCGAATCTGAGAAGGCGTCTTCTGGTTGAACCGCATATCCCGAAGGATGGAAGTAACTCACCCGATCTTACCATGGATAATCCACTTTCACAAAATCCAGATAGTACATGGAGTCGCTTTTTCCGTAATGCGGAGCTAGAGAGAATGGTTGATCAGGATTTATCACGTTTATATCCAGAACATGGGAATTATTTCCAGACACCAGGATGCCAAGGCATTTTAAGACGCATTTTATTACTTTGGTGTCTCAGGCACCCAGAATGTGGTTATAGACAAGGAATGCACGAGTTACTTGCTCCTCTACTTTATGTTCTCCAAGTTGATGTGGAGCGTCTTTCAGAAGTTCGAAAGCTTTATGAAGATATCTTCACCGACAAATTTGATGGCCTTCTATATCAGGAGAATGATCTTTCTTACAGCTTTGATTTTAGAAAATCTCAAGACTTGCTGGAGGATGAAATTGGCTCTCATGGAAATGCAAAAGTCAAAAGTCTTGATGAGCTTGATCCTGCATTACAGACCATTGTATTGCTGAGTGATGCTTATGGAGCTGAAGGTGAACTGGGCATTGTTTTATCTGAGAAATTCATGGAACATGATGCTTATTGCATGTTTGATGCTTTAATGAGTGGTGTCCGTGGTTCAGTTGCGATGGCCGATTTCTTCTCTTCCTTCCCTGTAGCAGGGTCGCAAACTGGCCTGCCTCCTGTTATTGAAGCTTCTACTGCATTGTATCATTTGCTGTGTCTTGTGGATTCATCTCTGTATAGCCATCTTTTGGATCTTGGTGTTGAACCCCAATACTTTTCTCTCCGATGGTTGCGAGTTCTATTCGGACGTGAGTTTTCACTTGACAATCTATTGATAATCTGGGATGAGATCTTTGCATCGGATAATAGTAAAGTTGAAAAAAGTGTTGATGACAACATAGACTGGGGTTTGAGGATTTTGCATTCTCCTCGTGGAGCATTTATTGCAGCTATGGCTGTTGCAATGCTACTTCATTTAAGATCTTCACTGCTTGCTACCGAAAATCCTACCACCTGTCTTCAGAGATTATTAAACTTTCCTGAAAACATTAATATTAAAAAGCTGCTGGAGAAGGCCAAATCATTGCAAGCTCGTGCACTAAGTGTTGATATTTCTTCTCCATCACCTTTGATTATAGGATATCATCTCCAAAGTAAATCAGTTATGACGCGATCTCAGACCCTTCCTTCTGAAACTGTGTCTCCAAAAACTCCTGTAAATTTGTTAACTGACAGCTACTGGGAAGAAAAATGGAGGGTTGCACATGAGGCTGAAGAACTTAAGCAAGATGGTATCGAACAACAGATTCCGACTCGGAAAAAGGGCTGGACAGAAAAGGTAAAAAACACACTGAGAAGAGCGGGATCTGATCCACCACCTTCAAGGATTAAGAATGGCAAAAAGGAATCTAAGGTGGTTAGGCGAAACATATTGGAAGCGCTTCATAAGGCACTTGGACCTGAGGAAGAAGCAGAACAAATGGATTGCCATGAAATCCTATGCAAGCAGGAAAATATTTCTGAAGCAGCTGAAGGTGTGCAGCAAAATGATAACTCTAAAGGCGACAACAGTTACTCATCTGATGATAGATGTCCAAGTGGAAATACAGGGATAGAGGAAAGCTCCTCTGTATATTCTGACTCAACTAGCCCGCCTAATGAGGCCAATTATCATGAAATTACCTCGCAGGGAAGTAGTGTTGCCTCTAATTTATATCTTGACGAATGCGATGAAACTGCAGATACCAGTCTCAGTGATCCACCTCTTCCAGTCTCTGATCATCCTGAGAGCATACCTGAAACATCAGAGTCCACTGATGTTGATGTTGATAAATCTGAGAACATACCTCAGATGTCAGGGTGCAATAATAATGATCCAGGAAATTCTGCTACACATCCCAAGGAGAAAAAGCAGAATAAATTTCAGTGGTTTTGGAAGTTTGGACGGAATACCGTTGAGGGTATATCGGGGAAAGTAGGAGCTGCTTCTGAACCTACAAAATCCACCAGCAGCTGTAGTAACCAAAGTAATTCGCAACCACCTGTCTCTTCTACCACCAGTGAGCATTTCACTTCTGTTAGTAGCAAAGGAGATTCTGTAGACCAGAATGTGATGGGCACTTTGAAGAATATTGGACAGTCTATGCTTGACCATATCCAGGTAATTGAATCTGTTTTCCAACAAGACAGGAACCAGGGAGTCTCAGTGGAGAACTTATCTAAAAATATTCTTGTTGGCAAAGGGCAGGTTACTGCCATGGCAGCTCTCAAGGAGCTTCGGAAGATTAGCAATATTCTGTCTGAGATGTGA | 2580 | 0.4337 | MPPALMNPLMPPPPPPSVSVSAPPELEGSDDVSGRSVTQKRRFGDLRGLQWRVDLGVLPSESSTSIDDLRRVTADCRRRYANLRRRLLVEPHIPKDGSNSPDLTMDNPLSQNPDSTWSRFFRNAELERMVDQDLSRLYPEHGNYFQTPGCQGILRRILLLWCLRHPECGYRQGMHELLAPLLYVLQVDVERLSEVRKLYEDIFTDKFDGLLYQENDLSYSFDFRKSQDLLEDEIGSHGNAKVKSLDELDPALQTIVLLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMSGVRGSVAMADFFSSFPVAGSQTGLPPVIEASTALYHLLCLVDSSLYSHLLDLGVEPQYFSLRWLRVLFGREFSLDNLLIIWDEIFASDNSKVEKSVDDNIDWGLRILHSPRGAFIAAMAVAMLLHLRSSLLATENPTTCLQRLLNFPENINIKKLLEKAKSLQARALSVDISSPSPLIIGYHLQSKSVMTRSQTLPSETVSPKTPVNLLTDSYWEEKWRVAHEAEELKQDGIEQQIPTRKKGWTEKVKNTLRRAGSDPPPSRIKNGKKESKVVRRNILEALHKALGPEEEAEQMDCHEILCKQENISEAAEGVQQNDNSKGDNSYSSDDRCPSGNTGIEESSSVYSDSTSPPNEANYHEITSQGSSVASNLYLDECDETADTSLSDPPLPVSDHPESIPETSESTDVDVDKSENIPQMSGCNNNDPGNSATHPKEKKQNKFQWFWKFGRNTVEGISGKVGAASEPTKSTSSCSNQSNSQPPVSSTTSEHFTSVSSKGDSVDQNVMGTLKNIGQSMLDHIQVIESVFQQDRNQGVSVENLSKNILVGKGQVTAMAALKELRKISNILSEM | 859 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip04g01417 | 859 | SUPERFAMILY | Ypt/Rab-GAP domain of gyp1p | 45 | 338 | IPR035969 | - | |
| Aip04g01417 | 859 | MobiDBLite | consensus disorder prediction | 752 | 791 | - | - | |
| Aip04g01417 | 859 | MobiDBLite | consensus disorder prediction | 749 | 791 | - | - | |
| Aip04g01417 | 859 | PANTHER | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN | 2 | 790 | - | - | |
| Aip04g01417 | 859 | MobiDBLite | consensus disorder prediction | 601 | 652 | - | - | |
| Aip04g01417 | 859 | MobiDBLite | consensus disorder prediction | 669 | 725 | - | - | |
| Aip04g01417 | 859 | Pfam | Rab-GTPase-TBC domain | 277 | 378 | IPR000195 | - | |
| Aip04g01417 | 859 | Pfam | Rab-GTPase-TBC domain | 127 | 186 | IPR000195 | - | |
| Aip04g01417 | 859 | ProSiteProfiles | TBC/rab GAP domain profile. | 41 | 378 | IPR000195 | - | |
| Aip04g01417 | 859 | MobiDBLite | consensus disorder prediction | 541 | 560 | - | - | |
| Aip04g01417 | 859 | Gene3D | putative rabgap domain of human tbc1 domain family member 14 like domains | 110 | 295 | - | - | |
| Aip04g01417 | 859 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Aip04g01417 | 859 | Coils | Coil | 66 | 86 | - | - | |
| Aip04g01417 | 859 | PANTHER | YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN | 2 | 790 | - | - | |
| Aip04g01417 | 859 | SMART | tbc_4 | 38 | 408 | IPR000195 | - | |
| Aip04g01417 | 859 | Gene3D | - | 317 | 459 | - | - | |
| Aip04g01417 | 859 | SUPERFAMILY | Ypt/Rab-GAP domain of gyp1p | 314 | 453 | IPR035969 | - | |
| Aip04g01417 | 859 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Aip04g01417 | 859 | MobiDBLite | consensus disorder prediction | 701 | 719 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip04g01417 | Aip-Chr4 | 27901778 | 27906216 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip04g01417 | K18469 | - | gmx:100812967 | 1125.92 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Aip01g03316 | 01 | 136291510 | 136295713 | Aip04g01417 | 04 | 27901778 | 27906216 | PCT |