Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01165 ATGGCAATGGAGGAGGAAGAGCCGAGCCAGCTGAAGAGAGCGTTGATTGATTCCTCTGCTGGAGCTATTTCTGGTGCTATATCAAGAACAGTTACCTCTCCCCTTGATGTTATTAAGATTAGGTTCCAGGTTCAACTCGAGCCCACATCTTCATGGGCTTTACTACGCAAGGAAATTTCTGCACCATCAAAATATACTGGCATGCTTCAAGCAAGCAAAGATATCTTTAGAGAAGAAGCTTTGCTCATGGTTATGCCATATACATCCATACAGTTCACAGTTTTGCACAAGTTAAAATCTTTTGCCTCTGGTTCTTCCAAATCAGAGAATCACATTAATTTGAGCCCTTATCTATCCTATGTGAGTGGGGCATTAGCTGGGTGTACAGCTACTGTAGGATCATATCCTTTTGATCTCCTTCGAACCATATTAGCTTCTCAAGGTGAACCGAAGGTTTATCCAAACATGAGGTCAGCATTCGTTGACATTGTTAAGACTCGTGGTTTCTCTGGCTTGTATGCCGGACTGTCACCAACGCTAGTTGAGATTATACCTTATGCAGGCCTACAATTTGGTACTTACGATACGTTTAAACGTTGGGCTATGGCATGGAACCACACTCAATACTCAAATGCTATTGGAGAAGATAGCCTATCTAGCTTTCAACTTTTCCTGTGTGGGTTGGCTGCTGGTACATGCGCTAAGCTTGTTTGTCATCCACTTGATGTAGTCAAGAAAAGATTTCAGATTGAAGGTCTGCAAAGGCATCCAAGATATGGAGCTCGTGTGGAACACCGTGCGTACAGAAACATGTTTGACGCCATGAAACGGATATCACAGGCAGAAGGTTGGGCTGGTCTGTATAAGGGGATCATCCCATCAACTGTTAAAGCTGCACCAGCTGGTGCTGTAACATTTGTAGCATATGAATTGACATCAGATTGGCTCGAGTCAATTTTGACTTGA 966 0.4327 MAMEEEEPSQLKRALIDSSAGAISGAISRTVTSPLDVIKIRFQVQLEPTSSWALLRKEISAPSKYTGMLQASKDIFREEALLMVMPYTSIQFTVLHKLKSFASGSSKSENHINLSPYLSYVSGALAGCTATVGSYPFDLLRTILASQGEPKVYPNMRSAFVDIVKTRGFSGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWAMAWNHTQYSNAIGEDSLSSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVEHRAYRNMFDAMKRISQAEGWAGLYKGIIPSTVKAAPAGAVTFVAYELTSDWLESILT 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01165 321 PRINTS Mitochondrial carrier protein signature 129 147 IPR002067 GO:0055085
Aip04g01165 321 PRINTS Mitochondrial carrier protein signature 173 191 IPR002067 GO:0055085
Aip04g01165 321 PRINTS Mitochondrial carrier protein signature 30 44 IPR002067 GO:0055085
Aip04g01165 321 PRINTS Mitochondrial carrier protein signature 17 30 IPR002067 GO:0055085
Aip04g01165 321 PRINTS Mitochondrial carrier protein signature 227 249 IPR002067 GO:0055085
Aip04g01165 321 Gene3D Mitochondrial carrier domain 9 318 IPR023395 -
Aip04g01165 321 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 7 320 - -
Aip04g01165 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 114 200 IPR018108 -
Aip04g01165 321 SUPERFAMILY Mitochondrial carrier 13 310 IPR023395 -
Aip04g01165 321 Pfam Mitochondrial carrier protein 115 201 IPR018108 -
Aip04g01165 321 Pfam Mitochondrial carrier protein 18 82 IPR018108 -
Aip04g01165 321 Pfam Mitochondrial carrier protein 218 316 IPR018108 -
Aip04g01165 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 12 112 IPR018108 -
Aip04g01165 321 PANTHER SOLUTE CARRIER FAMILY 25 7 320 - -
Aip04g01165 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 218 315 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01165 Aip-Chr4 18284706 18289146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01165 4 321 Organic Solute Cotransporters AT3G21390 72.673 4.29e-178 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01165 K15108 - gmx:100803750 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01165 04 18284706 18289146 Aip04g01165 04 18284706 18289146 ECH
Aip01g02803 01 129627980 129630663 Aip04g01165 04 18284706 18289146 PCT