Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01077 ATGCTTGTAAGAAATCTTGTGAGAATCAGTGGGTTGTATTTTCCATCTTTTTACTATTATCTTTTTCAGGTGGCATTGCTCTTGCTTCTGGCATGGAGCAATGCCGTGATAATTGTTGATGGATATGGTGGACAATGTAGTTTGAATCCAACACTTGATCCTAGACTACATAGTGTCTCAATTCTTGAGTTTGGTGCTGGCGGCACTCAGCTCTATGTGCCGCCCAGAAAATGGCTCACAGGAAGCTTCAACCTCACTAGCCACCTTACCTTTTTTTTGGAAAAAGGTGCTACTATTATTGGATCTCAGGATCCAACTCATTGGGATGTTTTACATGATGTGGTCATAACAGGTAACAATGGAACCATCAACGGCATGGGATCTGTTTGGTGGGAGTGGTTTACCTTGCATACACTAAATCATATCCGTCCTCATCTGATTGAACTTGTCGAATCTGATTATGTGGTAGTTTCAAATCTCACAATCTTGAACCCCCGGCATACGCAATATACCATGTTTATTGCAGAATCACCTTTTACTGTTGGTATAGTTCCTGATTCTTCTAATAATGTTTGTATAGAAGATTGCATTGTTGCTATGGGACATGATGCAATTTCTCTTAAAAGTGGTTGGGATGAGTATGGTGTTGCCTATGGTAGACCAACAGAGAATGTACACATTAGAAGGGTGACTTTGAGTGCATTTTCTGGCTCTACTCTTGCATTTGGTAGTGAAATGTCTGGTGGTCTTTCGAATGTTTTCATGGAACATTCTCATGTTCTCGACTCGGATAAAGGCGTCCAGTTCAGAACAACCAGAGGTAGAGGTGGTTACATGAAAGAAATTGTTATATCTGACATACAAATGGACAATGTCTATGTTTTGGATTTTATCACCTTGAAGGGTGTTATTGGCAGAAACATCACTGTTGCCGGAAGCTTTGCTGGAATAGAAGAATCCCCTTTCACCAACATATGCCTTTCCAACATAACCTTGTCTATAAACTCTATTTCAAGTGCCTGGGAATGTTCAAATGTCTTAGGATCTTCGAATTTTGTCAATCCTGAACCTGGTCCAGAACTTCGGAACCCTACAAACTCTTCCTTGTCGTGTTTCTACTTACTGAGTACCAGTGGAAGAAAAGCCTCAGCATTGTGA 1158 0.4067 MLVRNLVRISGLYFPSFYYYLFQVALLLLLAWSNAVIIVDGYGGQCSLNPTLDPRLHSVSILEFGAGGTQLYVPPRKWLTGSFNLTSHLTFFLEKGATIIGSQDPTHWDVLHDVVITGNNGTINGMGSVWWEWFTLHTLNHIRPHLIELVESDYVVVSNLTILNPRHTQYTMFIAESPFTVGIVPDSSNNVCIEDCIVAMGHDAISLKSGWDEYGVAYGRPTENVHIRRVTLSAFSGSTLAFGSEMSGGLSNVFMEHSHVLDSDKGVQFRTTRGRGGYMKEIVISDIQMDNVYVLDFITLKGVIGRNITVAGSFAGIEESPFTNICLSNITLSINSISSAWECSNVLGSSNFVNPEPGPELRNPTNSSLSCFYLLSTSGRKASAL 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01077 385 SUPERFAMILY Pectin lyase-like 54 362 IPR011050 -
Aip04g01077 385 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 111 293 - -
Aip04g01077 385 Pfam Glycosyl hydrolases family 28 81 292 IPR000743 GO:0004650|GO:0005975
Aip04g01077 385 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 67 111 - -
Aip04g01077 385 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 294 378 - -
Aip04g01077 385 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 23 68 - -
Aip04g01077 385 PANTHER PECTIN LYASE-RELATED 111 293 - -
Aip04g01077 385 PANTHER PECTIN LYASE-RELATED 67 111 - -
Aip04g01077 385 PANTHER PECTIN LYASE-RELATED 294 378 - -
Aip04g01077 385 PANTHER PECTIN LYASE-RELATED 23 68 - -
Aip04g01077 385 Gene3D - 54 355 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01077 Aip-Chr4 15790269 15792456 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01077 24 372 Glycoside Hydrolase AT3G16850 45.309 1.81e-113 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01077 - - adu:107483516 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01077 04 15790269 15792456 Aip04g01077 04 15790269 15792456 ECH
Aip01g02856 01 130444011 130446199 Aip04g01077 04 15790269 15792456 PCT