Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02856 ATGCTAGTGGCACTGGTGTTGCTGCTGGCATTGAGCAATGAAGTAAGAGTTAATGGTTATGGTGGTTCTGAGCAATGTGAATATAGTCAAGAACTAGCTCCAAGACCACACAGTGTCTCTATTTTGGAGTTTGGTGCTGTTGGGGATGGAAAGACACTGAATACCATTGCATTCCAGAATGCAATATTCTATCTCAAGTCATTCGCCGATAAGGGTGGCGCTCAGCTTTATGTACCGCCTGGACAATGGCTCACCGGAAGCTTCAACCTCACTAGCCATCTTACCCTCTTTCTAGAAAGAGGTGCTGTCATTATTGGATCTCAGGATCCGTTTCATTGGGAAGTTATTGATCCTTTACCTTCTTATGGACGAGGAATCGAAGCTCCCGGCGGAAGATACCTTAGCTTGATAAATGGATACATGTTAAATGATGTGGTCATTACAGGCAACAATGGCACCATAGATGGTGTTGGATCGATTTGGTGGCAATCCTTTACTTCTCATTCCTTGAACTATAGCCGACCTCATCTAATCGAATTAGTCGCATCTAACTCGGTGGTAGTTTCAAATATCACATTCCTGAATACCCCTGCATATGGCATCCACCCAGTTTATTGCAGCAATGTACATATTCACAATATTTCAATATCAGCTCCTTCAGAATCCCCTTTCACTGTTGGCATAGTACCAGATTCTTCTGATAAAGTGTGTATAGAAGATTGTACAATTAGCATGGGGTTTGATGCAATTGCACTCAAAAGTGGCTGGGATGAGTATGGCATTGCCTATGGCAGGCCTACAAAAAATGTGCACATCAGAAGGGTGAATCTCCAATCTTCTTCCGGCTCTACTCTTGCGTTTGGCAGTGACATGTCCGGCGGCATTTCGAATGTCCTAGTGGAGCATGTTCATCTCTACAACTCAAAAACCGGCATTGTGTTCAGAACCACCAGGGGAAGAGGTGGTTACATGAAGGAGATAGTTATATCAGACATAGAAATGGAGAACATATACCGAGCGATCGCGGCCACAGGCCACTGTGGATCTCATCCTGATGACAAGTTTGATCCTAATGCTCTCCCACACTTGGATCAAATTATATTGAAGAACATGACTGGGACAAACATCACTATTGCTGGAACCTTTTCTGGACTAGAAGAATCTCCTTTTACTAACATATGCCTTTCAAATCTAAACTTCTCTCTCAATTCTATGTCTCCCTTTACATGGGAATGCTCAAATGTCTCTGGATTCTCTGAATCTGTTGTCCCAAAACCTTGTCTTGATCTTGAGACCCCTTCAGTTTCTTACACAGCATGTTCCTCCATGCTAAGCAATAGAGCAAAGGCAACAACACAAGCTTCATATTCTTCTGCTTGA 1380 0.4312 MLVALVLLLALSNEVRVNGYGGSEQCEYSQELAPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGQWLTGSFNLTSHLTLFLERGAVIIGSQDPFHWEVIDPLPSYGRGIEAPGGRYLSLINGYMLNDVVITGNNGTIDGVGSIWWQSFTSHSLNYSRPHLIELVASNSVVVSNITFLNTPAYGIHPVYCSNVHIHNISISAPSESPFTVGIVPDSSDKVCIEDCTISMGFDAIALKSGWDEYGIAYGRPTKNVHIRRVNLQSSSGSTLAFGSDMSGGISNVLVEHVHLYNSKTGIVFRTTRGRGGYMKEIVISDIEMENIYRAIAATGHCGSHPDDKFDPNALPHLDQIILKNMTGTNITIAGTFSGLEESPFTNICLSNLNFSLNSMSPFTWECSNVSGFSESVVPKPCLDLETPSVSYTACSSMLSNRAKATTQASYSSA 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02856 459 SUPERFAMILY Pectin lyase-like 32 432 IPR011050 -
Aip01g02856 459 Gene3D - 23 421 IPR012334 -
Aip01g02856 459 PANTHER PECTIN LYASE-RELATED 2 443 - -
Aip01g02856 459 Pfam Glycosyl hydrolases family 28 136 416 IPR000743 GO:0004650|GO:0005975
Aip01g02856 459 Pfam Pectate lyase superfamily protein 39 96 IPR024535 -
Aip01g02856 459 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 2 443 - -
Aip01g02856 459 SMART pbh1 324 345 IPR006626 -
Aip01g02856 459 SMART pbh1 267 289 IPR006626 -
Aip01g02856 459 SMART pbh1 233 254 IPR006626 -
Aip01g02856 459 SMART pbh1 206 232 IPR006626 -
Aip01g02856 459 SMART pbh1 295 316 IPR006626 -
Aip01g02856 459 SMART pbh1 183 205 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02856 Aip-Chr1 130444011 130446199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02856 1 457 Glycoside Hydrolase AT3G16850 59.737 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02856 - - gmx:100802343 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02856 01 130444011 130446199 Aip01g02856 01 130444011 130446199 ECH
Aip01g02856 01 130444011 130446199 Aip04g01077 04 15790269 15792456 PCT