Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01035 ATGTCTTCTTCTTCTTCTTCTCGATTCAATGGCAAGATGGGTGGCATGAAGTTTTGCACCAAATGCAATAACATTCTGTACCCTAAGGAAGACAAGGAGTTAAAGATTCTCATGTACGCGTGCCGCAATTGCGATCACGAGGAGATTGCTGATAGCAACATTGTGTACAGAACAAAGATACATCATTCTACAGCAGAGAATACTCAGGCTACTGAGAATCTAGCTGCAGACCCAACTCTTCCACGCACCAAGGCGGCTCGCTGCAGTCAATGCAACCATGGAGAAGCTGTGTTCTTTCAGGGAACAGCCAGAGGTGAAGAAGAAATGTGTCTTTTTTTCGTTTGCTGCAACCCGAATTGCGGTCACCGATGGAGAGACTGA 381 0.4593 MSSSSSSRFNGKMGGMKFCTKCNNILYPKEDKELKILMYACRNCDHEEIADSNIVYRTKIHHSTAENTQATENLAADPTLPRTKAARCSQCNHGEAVFFQGTARGEEEMCLFFVCCNPNCGHRWRD 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01035 126 SMART rpol9cneu 17 70 IPR001529 GO:0006351
Aip04g01035 126 SUPERFAMILY Zinc beta-ribbon 65 126 - -
Aip04g01035 126 CDD Zn-ribbon_RPB9 76 125 IPR034012 GO:0006379
Aip04g01035 126 Pfam RNA polymerases M/15 Kd subunit 16 52 IPR001529 GO:0006351
Aip04g01035 126 PANTHER DNA-DIRECTED RNA POLYMERASE 13 126 IPR012164 GO:0006351
Aip04g01035 126 Pfam Transcription factor S-II (TFIIS) 87 125 IPR001222 GO:0003676|GO:0006351|GO:0008270
Aip04g01035 126 ProSitePatterns RNA polymerases M / 15 Kd subunits signature. 18 44 IPR019761 -
Aip04g01035 126 SMART Cys4_2 86 126 IPR001222 GO:0003676|GO:0006351|GO:0008270
Aip04g01035 126 PIRSF RNApol_RpoM 16 126 IPR012164 GO:0006351
Aip04g01035 126 Gene3D - 13 58 - -
Aip04g01035 126 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 13 126 - -
Aip04g01035 126 ProSiteProfiles Zinc finger TFIIS-type profile. 84 125 IPR001222 GO:0003676|GO:0006351|GO:0008270
Aip04g01035 126 Gene3D - 59 126 - -
Aip04g01035 126 SUPERFAMILY Zinc beta-ribbon 15 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01035 Aip-Chr4 14864253 14866002 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01035 K03017 - nnu:104605091 203.756
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01035 04 14864253 14866002 Aip04g01035 04 14864253 14866002 ECH
Aip01g02889 01 130870110 130872212 Aip04g01035 04 14864253 14866002 PCT