Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02889 ATGACTGTGTACAAGTTCTGCCCTGAATGCAACAATATTCTTTATCCTAAGGAAGACAGGGAGCATAAGATTCTCTTCTTCGCTTGCCGCACCTGTGATCATCAGGAGGTTGCTGACAATAACTGTGTGTATAGAAATGAGATATATCATTCGGCTGAGGAGCGAACTCAAGTGTTGGAAGATGTAGCTTCAGATCCAACTCTTCCTCGTACCAAGTCTGTTCGTTGCGCTCAATGCAATCATGGAGAAGCTGTCTTCTTCCAGGGAACTATTAGAAGGGAAGAAGGTATGACACTGTCTTATGTTTGCTGCAACCCAAACTGTGGCTACCGATGGCGAGATCAAGATTCATAA 354 0.4407 MTVYKFCPECNNILYPKEDREHKILFFACRTCDHQEVADNNCVYRNEIYHSAEERTQVLEDVASDPTLPRTKSVRCAQCNHGEAVFFQGTIRREEGMTLSYVCCNPNCGYRWRDQDS 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02889 117 Pfam RNA polymerases M/15 Kd subunit 5 36 IPR001529 GO:0006351
Aip01g02889 117 SMART Cys4_2 74 114 IPR001222 GO:0003676|GO:0006351|GO:0008270
Aip01g02889 117 CDD Zn-ribbon_RPB9 64 113 IPR034012 GO:0006379
Aip01g02889 117 ProSiteProfiles Zinc finger TFIIS-type profile. 72 113 IPR001222 GO:0003676|GO:0006351|GO:0008270
Aip01g02889 117 SUPERFAMILY Zinc beta-ribbon 51 115 - -
Aip01g02889 117 SMART rpol9cneu 5 58 IPR001529 GO:0006351
Aip01g02889 117 SUPERFAMILY Zinc beta-ribbon 4 48 - -
Aip01g02889 117 Pfam Transcription factor S-II (TFIIS) 75 113 IPR001222 GO:0003676|GO:0006351|GO:0008270
Aip01g02889 117 ProSitePatterns RNA polymerases M / 15 Kd subunits signature. 6 32 IPR019761 -
Aip01g02889 117 Gene3D - 47 114 - -
Aip01g02889 117 PANTHER DNA-DIRECTED RNA POLYMERASE 1 114 IPR012164 GO:0006351
Aip01g02889 117 PIRSF RNApol_RpoM 4 116 IPR012164 GO:0006351
Aip01g02889 117 Gene3D - 1 46 - -
Aip01g02889 117 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 1 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02889 Aip-Chr1 130870110 130872212 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02889 K03017 - vvi:100253286 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02889 01 130870110 130872212 Aip01g02889 01 130870110 130872212 ECH
Aip01g02889 01 130870110 130872212 Aip04g01035 04 14864253 14866002 PCT