Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04517 ATGAACTGTTTCTTAGTGTCACTCGTCTCTCTCTGCCCTCTCCTCCTTGCTCTCTGTGCTCAGAGTGTGTCATCTCGAAATGTGTCTGAAACTTACCTACAGAAAGCTAGCTTCCCACCAAGAGGTTGGAATTCATACGATTCCTTTGGCTGGACAGTTTCTGAAGAAGAATTCTTACAGAATGCTGGAATAGTTTCTCGGAGCCTCAAAGCTCATGGATACAAGTATGTTGTTGTGGATTACCTCTGGTATAGGAAGAATGTCCAAGGTGCTAATTCGAATTCTCTTGGATTTGATGTGATTGATGAGTGGGGGAGGATGATCCCTGACCCCGGAAGGTGGCCTTCGTCCACAGGTGGGAAGGGATTCAGTGAAGTAGCCAATAAAGTACATAACATGGGTTTGATGTTCGGAATTCATGTTATGAGAGGGATAAGCACACAAGCAGTCAATGCAAACACCCCTATCCTAGACACAACAAAGGGGGGTGCTTATCAAGAGTCTGGTCGAGTATGGCATGCAAAAGACATAGCATTGCCGGGAAGGGCTTGTGCATGGATGTCTCATGGTTTCATGAGTGTGAATACACAGTTGGGGGCTGGGAGGGCCTTTTTGAGATCCCTTTATGAGCAGTATGCTGCATGGGGTGTTGATTTTGTGAAACATGATTGTGTGTTTGGTGCTGACTTGGATTTAAATGAAATAACCTATGTATCAGGGGTTCTCCGGGAGCTTAACCATCCCATTGTATATTCTCTATCTCCTGGAACTAGTGTGACACCAGCATTGGCCAAGGATGTCAGTGGGCTAGTAAACATGTATCGTATAACAGGAGATGACTGGGATAACTGGGATGATGTCAAATCTCATTTTGATATATCAAGGGATTTAGCTGCAGCTAGTATGATAGGAGCAAAAGGTTTAAATGGGAATTCATGGCCTGATTTGGACATGCTACCATTCGGATGGCTAACTGATCCAGGTTCCAATCAAGGTCCACACAGGTTTAGTAAACTCAATCTAGAAGAGAAGAGGACACAGATGACATTGTGGTCCATGGCCAAGTCGCCCCTCATGTATGGTGGAGATCTGCGGAGTATTGATATTGTCACATATAGTCTTATCACGAATCCTATCCTGCTGGAAATTAATTCTTTCAGCTCAAGTAACAGGGAGTTTCCTGGCATCACAAGTTCGGAGAACTTGAATCATAAAGACCATCATCTTAGAGTGAAGAAAAGAAGATCCAAGAGAGGAGGGAAACCATCATATACACATGCATTAAGTCTCATTGGCTGCAGTGAAACAAAGGCAAGGGGTTGGTCTGTTGAAAGTCTCAATGAAGATCTTGAAAGAATCTGTTGGAAAAGAAGTTTAGAAAACCAGCTTCAGCCTCCTTTCTGTGTACACAAGAGAGAATTTCAGTTCAAATTAGATGGCGAGAGTACGCATCAAGAGGACTATCGGGGTAAACATCATTTGGTTGCAACCAACGAAATGAAATTCTGCTTGGATGCTTCCCCAAAACAAAAGCTTACTTCTAAGGAGTTCAAGAGTGGTACATTTTCTCCTTGCAGATGGGATGCAAATCAGATGTGGAAGCTGAATCCAAATGGGACCATGGTAAACAGTTACTCCGGTCTGTGTGCAATAGCAGAATCTGCCAAAGATGGTATTAGTCCTGGTGGGATTCGCTCTTGGATTGCAAAAGGAAGAAGAGGTGAAGTGTATGTTGCTTTCTTCAATTTAAGTGAACAAAAGACAGTGATAAGTACAAAGACATCGTCTCTGGGTAATGCTTTTGGTGATAGAACAAGCATCACTTCCTGCCACGGCACGGAAGTTTGGAGTGGAAAGCAAGTCATAACAACTCAGGGAACTTTATCAGCTGAAGTGGGACTTCACGGATGTGCCTTATTTGTTCTCAATTGCCACTAG 1938 0.435 MNCFLVSLVSLCPLLLALCAQSVSSRNVSETYLQKASFPPRGWNSYDSFGWTVSEEEFLQNAGIVSRSLKAHGYKYVVVDYLWYRKNVQGANSNSLGFDVIDEWGRMIPDPGRWPSSTGGKGFSEVANKVHNMGLMFGIHVMRGISTQAVNANTPILDTTKGGAYQESGRVWHAKDIALPGRACAWMSHGFMSVNTQLGAGRAFLRSLYEQYAAWGVDFVKHDCVFGADLDLNEITYVSGVLRELNHPIVYSLSPGTSVTPALAKDVSGLVNMYRITGDDWDNWDDVKSHFDISRDLAAASMIGAKGLNGNSWPDLDMLPFGWLTDPGSNQGPHRFSKLNLEEKRTQMTLWSMAKSPLMYGGDLRSIDIVTYSLITNPILLEINSFSSSNREFPGITSSENLNHKDHHLRVKKRRSKRGGKPSYTHALSLIGCSETKARGWSVESLNEDLERICWKRSLENQLQPPFCVHKREFQFKLDGESTHQEDYRGKHHLVATNEMKFCLDASPKQKLTSKEFKSGTFSPCRWDANQMWKLNPNGTMVNSYSGLCAIAESAKDGISPGGIRSWIAKGRRGEVYVAFFNLSEQKTVISTKTSSLGNAFGDRTSITSCHGTEVWSGKQVITTQGTLSAEVGLHGCALFVLNCH 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04517 645 Gene3D Aldolase class I 30 387 IPR013785 -
Aip03g04517 645 SUPERFAMILY Glycosyl hydrolase domain 559 643 - -
Aip03g04517 645 SUPERFAMILY (Trans)glycosidases 36 384 IPR017853 -
Aip03g04517 645 Pfam Alpha galactosidase C-terminal beta sandwich domain 563 642 IPR041233 -
Aip03g04517 645 Gene3D - 556 644 IPR013780 -
Aip03g04517 645 CDD GH27 39 384 IPR002241 GO:0004553|GO:0005975
Aip03g04517 645 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 6 642 IPR002241 GO:0004553|GO:0005975
Aip03g04517 645 PANTHER ALPHA-GALACTOSIDASE 6 642 - -
Aip03g04517 645 SUPERFAMILY Ricin B-like lectins 498 550 IPR035992 -
Aip03g04517 645 Pfam Alpha galactosidase A 210 384 IPR002241 GO:0004553|GO:0005975
Aip03g04517 645 PRINTS Glycosyl hydrolase family 27 signature 33 52 IPR002241 GO:0004553|GO:0005975
Aip03g04517 645 PRINTS Glycosyl hydrolase family 27 signature 127 148 IPR002241 GO:0004553|GO:0005975
Aip03g04517 645 PRINTS Glycosyl hydrolase family 27 signature 342 363 IPR002241 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04517 Aip-Chr3 129450246 129456053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04517 7 473 Glycoside Hydrolase AT3G26380 63.214 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04517 - - gmx:100783705 1005.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04517 03 129450246 129456053 Aip03g04517 03 129450246 129456053 ECH
Aip03g04517 03 129450246 129456053 Aip10g01158 10 16586999 16592281 PCT