Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04227 ATGAGCATGTCCACAACCCTCACTTTGGAACCACTCTTCGGCTTCAACACACGCAGAGGCATCCCCATTTCCATTATTCACCGCTCTTTAAGGCCCAAGACATTGTTATTCCCTCCACCTTCTTCTCTCTCTTCTTCCACCATCATCAAGAGTTCCTCTTGGTCTTGGTCGGTATCCCACAGGCTCCACGCTCCAAAGTTTGAAGCTTTTGCCGCGAACACTGATACCCTCGAGCCCCTTCAATCATCTGATGTATTATTCAGCAAGATTTTCCCCATCAACAGAACTGAATTGTTGGAGGGACAAATCTTTGTTAGATTGGATCAGGGCAAAGACTTAAGAAATTGGGAGCTAACTGTGGGTTGCAATCTACCTGGGAAATGGGTTCTTCACTGGGGAGTTTCCCGCTTAGATGATGTTGGAAGTGAATGGGATCAGCCTCCTCGTGATATGATACCCCCAGGATCTGTTCCTATAAAGGACTATGCAATTGAGACACCTTTGAAGAAATCAACGTCATCTTCTGAAGGAGATAATTTTCATGAGGTCAAGATTGATCTTACATCCAACAGTGAAATCTCCGCAATTAATTTTGTTCTCAAGGATGAGGAAACTGGTGCTTGGTTTCAACACAAAGGAAGAGATTTCAAGGTTCCTCTAGTCAGCTACCTGAAGGAGGATGCTAATATAATTGGACCTAAAAAGGGCTTTAGTTTTTGGCCAGGGGCCTTGGGGCAGATATCTAACATTCTTCTCAAGTCAGAGGCAGTGCATAGCAACGATCAAGATAACGGCAAGCAATCCAGTGAGCCAAGAAAAGGAAATAGTCAACTAGAAGGCTTCTATGTAGAGCTGCCAATTACCAAAGAAGTTACTGTCGGCAACTCTATCAGTGTCTCCGTTAAGAAATGTGCTGAGACAGCTAACAATCTTTTATATTTAGAAACAGATATACCTGGAGAGGTTCTCCTTCATTGGGGAGTTTGCAAAGATGATTTGAGAAGGTGGGAAGTTCCACCTGCTCCTCATCCAGCAGAAACAGTAGCATTTAAGAACAGAGCTTTGAGAACTAAATTACAGTCAAGGGACAGCGGGAAGGGGAATTCAGTAGAAATTCCTGTGGGAGAAGAATTTTCAGGATTTCTTTTTGTTGTTAAGCTAGACGACAATACTTGGTTGAATGACAAGGGAAATGACTTTCATATCCCTCTGTCAAGTTCTAGTAACTCACTTACTAGCAAAAAAAAGGATCAATCAGAAGCTGTCCAGAGGGAAGTGACAAGAGTGGAAAGTCAGGAGGAACCTACCTCTACATTTACCGATGGAATAATCAGTGAAATAAGGCATTTAGTGACAGACATTTCCTCTGAGAAGACTCGAAAAACAAAATCCAAAGAAGCACAAGAAAGCATTCTTCAAGAAATTGAAAGACTTGCTGCTGAAGCTTATAGTATTTTTAGGACCAATGTTCCAACTTTCTCAGAGGAAACCATTGCGGAACCTGAGGCGGTGGCTTCTGTAGAATCAGAGACATTGGTGTCACCTGAGGCACCAAAAATATCCTCAGGGACAGGCACTGGTTATGAAATATTATGCCAAGGGTTTAACTGGGAATCTCATAAATCTGGAAGATGGTACATGGAGCTGAAAGAGAAAGCTGCAGAACTATCATCATTTGGTTTTACTGTAGTTTGGTTACCACCACCTACGGAGTCTGTGTCCCCTGAAGGATACATGCCAAAGGATTTATATAATTTAAATTCTAGATATGGAAACATTGATGAACTGAAGGATGTGGTGAAAAGCTTTCACAGAGCTGGAATCAAAGTACTTGGAGATGTCGTTTTGAATCATCGATGTGCCCACTTTAAGAACCAGAATGGTATTTGGAACATATTTGGAGGTCGCCTCAACTGGGACGATCGAGCAATTGTTGCTGATGATCCACATTTTCAGGGTAGAGGCAACAAAAGTAGTGGAGATAATTTCCATGCTGCTCCGAACATTGATCATTCACAGGAATTTGTGAGAAAGGATATTAAAGAATGGTTACTTTGGTTGAGGAAAGAAATTGGCTATGATGGGTGGAGGCTTGACTTTGTGAGAGGATTTTGGGGTGGTTATGTAAAGGATTACCTCGAAGCAAGTGAACCTTACTTTGCTGTTGGAGAGTACTGGGATTCCCTCAGTTATACATATGGCGAGATGGATCATAATCAAGACGCGCATAGGCAGCGGATCATTGACTGGATCAATGCTACCAATGGTACTGCGGGGGCATTCGATGTTACGACCAAAGGGATCCTTCACTCTGCATTGGATAAATGTGAATATTGGCGATTGTCAGATCAGAAGGGAAAACCCCCTGGAGTTCTTGGATGGTGGCCGTCTCGTGCTGTTACTTTTATAGAAAATCATGATACTGGCTCTACCCAGGGTCATTGGAGATTTCCAAGCGGAAAAGAGATGCAAGGATATGCATACATCCTTACTCACCCAGGAACTCCATCGGTGTTCTTTGATCACATATTCTCTCATTACAAGACTGAAATATCCATTCTTTTGTCTGTCCGGCAACGGAACAAGCTACACTGCCGGAGTATAGTAAAAATATGCAAGGCAGAAAGGGATGTTTATGCTGCAATCATAGATGATAAAGTTGCTATGAAGATTGGACCTGGTCATTTTGAGCCACCAAGTGGATCCCAAAAATGGTCCTCAGCTCTGGAAGGAAGAGATTATAAGATTTGGGAGGCATCATAA 2763 0.426 MSMSTTLTLEPLFGFNTRRGIPISIIHRSLRPKTLLFPPPSSLSSSTIIKSSSWSWSVSHRLHAPKFEAFAANTDTLEPLQSSDVLFSKIFPINRTELLEGQIFVRLDQGKDLRNWELTVGCNLPGKWVLHWGVSRLDDVGSEWDQPPRDMIPPGSVPIKDYAIETPLKKSTSSSEGDNFHEVKIDLTSNSEISAINFVLKDEETGAWFQHKGRDFKVPLVSYLKEDANIIGPKKGFSFWPGALGQISNILLKSEAVHSNDQDNGKQSSEPRKGNSQLEGFYVELPITKEVTVGNSISVSVKKCAETANNLLYLETDIPGEVLLHWGVCKDDLRRWEVPPAPHPAETVAFKNRALRTKLQSRDSGKGNSVEIPVGEEFSGFLFVVKLDDNTWLNDKGNDFHIPLSSSSNSLTSKKKDQSEAVQREVTRVESQEEPTSTFTDGIISEIRHLVTDISSEKTRKTKSKEAQESILQEIERLAAEAYSIFRTNVPTFSEETIAEPEAVASVESETLVSPEAPKISSGTGTGYEILCQGFNWESHKSGRWYMELKEKAAELSSFGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGNIDELKDVVKSFHRAGIKVLGDVVLNHRCAHFKNQNGIWNIFGGRLNWDDRAIVADDPHFQGRGNKSSGDNFHAAPNIDHSQEFVRKDIKEWLLWLRKEIGYDGWRLDFVRGFWGGYVKDYLEASEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINATNGTAGAFDVTTKGILHSALDKCEYWRLSDQKGKPPGVLGWWPSRAVTFIENHDTGSTQGHWRFPSGKEMQGYAYILTHPGTPSVFFDHIFSHYKTEISILLSVRQRNKLHCRSIVKICKAERDVYAAIIDDKVAMKIGPGHFEPPSGSQKWSSALEGRDYKIWEAS 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04227 920 PANTHER ALPHA-AMYLASE 88 920 - -
Aip03g04227 920 SMART alpha-amyl_c2 859 919 IPR012850 GO:0004556|GO:0005509|GO:0005975
Aip03g04227 920 MobiDBLite consensus disorder prediction 404 441 - -
Aip03g04227 920 SUPERFAMILY (Trans)glycosidases 528 846 IPR017853 -
Aip03g04227 920 SMART aamy 529 864 IPR006047 GO:0005975
Aip03g04227 920 PANTHER ALPHA-AMYLASE 3, CHLOROPLASTIC 88 920 - -
Aip03g04227 920 Pfam Alpha amylase, catalytic domain 556 811 IPR006047 GO:0005975
Aip03g04227 920 PRINTS Alpha-amylase signature 607 618 IPR006046 GO:0004556|GO:0005975|GO:0043169
Aip03g04227 920 PRINTS Alpha-amylase signature 693 704 IPR006046 GO:0004556|GO:0005975|GO:0043169
Aip03g04227 920 PRINTS Alpha-amylase signature 797 809 IPR006046 GO:0004556|GO:0005975|GO:0043169
Aip03g04227 920 MobiDBLite consensus disorder prediction 417 431 - -
Aip03g04227 920 Pfam Alpha-amylase C-terminal beta-sheet domain 860 918 IPR012850 GO:0004556|GO:0005509|GO:0005975
Aip03g04227 920 SUPERFAMILY Glycosyl hydrolase domain 863 918 - -
Aip03g04227 920 CDD AmyAc_arch_bac_plant_AmyA 530 869 - -
Aip03g04227 920 Gene3D - 863 919 IPR013780 -
Aip03g04227 920 Gene3D Glycosidases 529 862 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04227 Aip-Chr3 126509981 126518010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04227 3 920 Glycoside Hydrolase AT1G69830 64.744 0.0 1216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04227 K01176 - gmx:100788193 1535.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04227 03 126509981 126518010 Aip03g04227 03 126509981 126518010 ECH
Aip03g04227 03 126509981 126518010 Aip05g01759 05 36216318 36224654 PCT