Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03135 ATGGGACACATGAGCAAAGAGCAATCCCAATTGTTGTCAAAGATAGCCACCGGCAACGGTCATGGCGAAGACTCACCTTACTTTGACGGGTGGAAGGCTTATGATGAAAACCCTTATCACCCCACCAATAATCCTCACGGTGTTATCCAAATGGGTCTTGCAGAGAATCAGTTAACTGCTGATTTGGTTGAAGAATGGGTGATGAGTAACCCGGAGGCGTCCATTTGCACACCTGAAGGAGTAACTGACTTCAAAGCCATAGCTAACTTTCAGGATTATCATGGTCTCCCTGAGTTCAGAAAAGGTGTGGCTAAATTCATGGCTAAATGCAGAGGCAACAGAGTGAAGTTTGAGGCAGAGAGAATTGTGATGAGCGGTGGAGCCACCGGAGCACACGAGGTGACAACGTTCTGTTTGGCTGACCCCGGCGATGCCTTCTTGGTGCCTACTCCCTACTACCCAGGCTTTGATAGGGATTTGAGGTGGCGAACAGGGGTACAACTCGTTCCAGTCACATGTGAAAGCTCCAATAATTTCAAGTTGACAAAGCAAGCCTTGGAAGATGCTTACGACAAAGCTCGACAAGACAACATCAGAGTCAAAGGCTTACTCATTACGAACCCGTCAAACCCATTAGGCACAATCTTGGACCGAGCCACCCTTAGAACCATCGTCAAATTCATCAACGATAAGCGCATCCACTTAGTATGCGACGAAATCTACGCCGCCACGGTTTTCAGCCACCCGGGCTTCATAAGCATCGCTGAGATATTGGAGGAAGAAACAGACATGGAATGCGACCGTGACCTCGTTCACATTGTTTATAGCCTCTCCAAGGACATGGGCTTCCCTGGTTTCAGGGTGGGGATCATATATTCCTACAACGACAAGGTTGTCCAGTGCGCACGCAAGATGTCCAGCTTCGGATTGGTGTCTTCACAAACTCAGCATCTTCTGGCTTCCATGCTCAACGACGACGAGTTTGTGGGGAGGTTCCTTGCTGAGAGTGCAAAGAGGTTGGGAGAAAGGTACAGGGTTTTCACAAAGGGATTGGGTCAAGTTGGAATTAAGTGTTTGCCAAGTAATGCTGGGTTGTTCTTGTGGATGGATCTTCGTCGGCTTCTCAAGAAGGCAACATTTGAGGCTGAGATGGAGCTGTGGCGAGTCATCATTCACGAAGTTAAGATCAATGTTTCTCCCGGTGCTTCTTTTCATTGCTCTGAGCCAGGCTGGTTCAGGGTGTGCTATGCCAACATGGATGATGAGGCTGTTAAGGTTTCTCTTCAGAGGATTCACACCTTCGTCCTCAAGAACAAGGATGTCGTTGTTCCTGACAAGAAGCGTTGCTGGCAAGATAGCTTGAGGCTTAGCCTCATCAAGAACCGAAGGTTTGATGATATCATCATGTCACCTCACTCACCGATCCCTCACTCGCCCCTTGTCAATGCTACCAACTGA 1458 0.4842 MGHMSKEQSQLLSKIATGNGHGEDSPYFDGWKAYDENPYHPTNNPHGVIQMGLAENQLTADLVEEWVMSNPEASICTPEGVTDFKAIANFQDYHGLPEFRKGVAKFMAKCRGNRVKFEAERIVMSGGATGAHEVTTFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVTCESSNNFKLTKQALEDAYDKARQDNIRVKGLLITNPSNPLGTILDRATLRTIVKFINDKRIHLVCDEIYAATVFSHPGFISIAEILEEETDMECDRDLVHIVYSLSKDMGFPGFRVGIIYSYNDKVVQCARKMSSFGLVSSQTQHLLASMLNDDEFVGRFLAESAKRLGERYRVFTKGLGQVGIKCLPSNAGLFLWMDLRRLLKKATFEAEMELWRVIIHEVKINVSPGASFHCSEPGWFRVCYANMDDEAVKVSLQRIHTFVLKNKDVVVPDKKRCWQDSLRLSLIKNRRFDDIIMSPHSPIPHSPLVNATN 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03135 485 CDD AAT_like 89 432 - -
Aip03g03135 485 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 1 446 - -
Aip03g03135 485 Coils Coil 176 196 - -
Aip03g03135 485 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 276 289 IPR004838 GO:0003824|GO:0009058|GO:0030170
Aip03g03135 485 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 1 446 - -
Aip03g03135 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 51 77 - -
Aip03g03135 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 84 100 - -
Aip03g03135 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 121 141 - -
Aip03g03135 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 143 164 - -
Aip03g03135 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 197 221 - -
Aip03g03135 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 233 256 - -
Aip03g03135 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 270 294 - -
Aip03g03135 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 302 325 - -
Aip03g03135 485 Gene3D - 71 325 IPR015421 GO:0003824
Aip03g03135 485 Pfam Aminotransferase class I and II 49 431 IPR004839 GO:0009058|GO:0030170
Aip03g03135 485 Gene3D Aspartate Aminotransferase, domain 1 37 430 IPR015422 GO:0003824
Aip03g03135 485 SUPERFAMILY PLP-dependent transferases 21 434 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03135 Aip-Chr3 99801252 99803482 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03135 K20772 - gmx:100037458 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03135 03 99801252 99803482 Aip03g03135 03 99801252 99803482 ECH
Aip05g01093 05 15679881 15680693 Aip03g03135 03 99801252 99803482 PCT