Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02549 ATGGCAAGGCTGCTCCGTAACACTTCACTTATCAGACGCTCTTTCTTACAACCCGATACAGTGGATGCATTTCTTGTTTCTGAAGAAGCTCTTGCTTATAGACTTAAACGAGGAATTTTCGGCATGTCTCAATCTTTGAGCTTTTCAAGTAAAGGTAGAAGGCGCTCTAAGTCAGATGGAAGTGACTCTTGTGAAGAGAACATGTCTAAGAAAGATTTGGCCTTACAACATGCCATGGATCAGATCACTTCTGCTTTTGGAAAGGGATCTATCATGTGGCTTGGTCGTACTATCTCACCAAAAGATGTACCTGTGGTCTCAACCGGTTCATTTGCTCTAGATATAGCGCTCGGTGTTGGTGGTCTTCCAAAGGGACGTGTTGTGGAAATATTTGGACCTGAGGCTTCTGGGAAAACAACTCTTGCTTTACATGTGATTGCTGAGGCACAGAAGCTAGGAGGGTATTGTGCCTTTGTTGATGCTGAGCATGCACTTGATAAGTCACTTGCAGAGTCTATTGGTGTTAATACCGAGAACTTGCTTTTATCACAACCAGATTGTGGTGAACAGGCACTTAGTCTTGTAGATACCCTAATTCGGAGTGGTTCACTTGATGTAATTGTTGTCGATAGTGTGGCTGCCCTTGTTCCTAAAGGTGAACTTGATGGTGAGATGGGTGATGCTCACATGGCCATGCAGGCTAGGTTGATGAGCCAGGCACTTCGGAAGTTGTGCCACTCCTTGTCACTCTCACAGTGTATATTGATTTTTATAAACCAGGTGAGGTCAAAGCTTTCAACTTTTGGGGGGTTTGGTGGGCCGACTGAAGTTACTTGCGGCGGTAATGCACTGAAATTCTATGCTTCTGTTCGGCTAAATATCAAAAGAGTAGGGCTTGTGAAGAAAGGTGAAGAGACTTTAGGGAGCCAGGTTCAAGTTAAAATTGTTAAGAACAAGCTTGCGCCTCCATTTAAAACAGCGCAGTTCGAACTCGAGTTTGGGAAGGGTATTTGTAAAGAATCCGAGATTATAGAACTTAGCCTAAAACACAAGCTAATCTCAAAGAATGGTGCATATTTCGGGTATAATGGCCAGAATTTCCATGGCAAGGATGCCCTGAAGAGGTTCCTGGCTGAAAGTGATAACACACAAGAATTAACAGCGAAGCTCCGCGAGAAGCTACTTGACACCGAGAAAGAATCAGTCACGGAGTCACAGGAGGTGAATCGAGAGTCTCCGGATTCTAGTGACAATGAAACTGCTGTTGCTTTAGAAGCATGA 1281 0.4411 MARLLRNTSLIRRSFLQPDTVDAFLVSEEALAYRLKRGIFGMSQSLSFSSKGRRRSKSDGSDSCEENMSKKDLALQHAMDQITSAFGKGSIMWLGRTISPKDVPVVSTGSFALDIALGVGGLPKGRVVEIFGPEASGKTTLALHVIAEAQKLGGYCAFVDAEHALDKSLAESIGVNTENLLLSQPDCGEQALSLVDTLIRSGSLDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASVRLNIKRVGLVKKGEETLGSQVQVKIVKNKLAPPFKTAQFELEFGKGICKESEIIELSLKHKLISKNGAYFGYNGQNFHGKDALKRFLAESDNTQELTAKLREKLLDTEKESVTESQEVNRESPDSSDNETAVALEA 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02549 426 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 410 - -
Aip03g02549 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 337 IPR027417 -
Aip03g02549 426 ProSitePatterns recA signature. 283 291 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Aip03g02549 426 SUPERFAMILY RecA protein, C-terminal domain 339 392 IPR023400 -
Aip03g02549 426 PANTHER RECA 1 410 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip03g02549 426 Gene3D - 101 405 IPR027417 -
Aip03g02549 426 CDD recA 70 396 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip03g02549 426 Pfam recA bacterial DNA recombination protein 74 337 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip03g02549 426 PRINTS RecA protein signature 160 189 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip03g02549 426 PRINTS RecA protein signature 194 223 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip03g02549 426 PRINTS RecA protein signature 232 261 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip03g02549 426 PRINTS RecA protein signature 280 308 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip03g02549 426 PRINTS RecA protein signature 313 342 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip03g02549 426 PRINTS RecA protein signature 366 383 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip03g02549 426 MobiDBLite consensus disorder prediction 397 426 - -
Aip03g02549 426 Hamap Protein RecA [recA]. 71 398 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip03g02549 426 SMART AAA_5 124 298 IPR003593 -
Aip03g02549 426 TIGRFAM tigrfam_recA: protein RecA 71 391 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip03g02549 426 ProSiteProfiles RecA family profile 1. 102 261 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Aip03g02549 426 ProSiteProfiles RecA family profile 2. 271 342 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Aip03g02549 426 MobiDBLite consensus disorder prediction 397 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02549 Aip-Chr3 44539004 44543741 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02549 K03553 - gmx:100798983 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03367 01 136761365 136765186 Aip03g02549 03 44539004 44543741 PCT