Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g03367 ATGGCGAGGATGCTTCGCAACGCTTCCATTATCAAGCGCACTCTGTTCCTCCCTCAGGGGTTTAAACTAGGAGTATTGGGCACTTCTCAGGCTCTAAGCTTTTCGTCTAAAGGTAGAAGGCGCTCTAAATCTGATGGAAGTAGTGACTCTGGTGAAGAGAGCATGTCTAAGAAAGAGTTGGCCCTCCAGCAAGCTCTAGATCAGATCACTTCTTCATTTGGAAAGGGATCTATCATGTGGCTTGGCCGCTCTGTCTCACCAAGACATGTACCTGTAGTCTCAAGTGGTTCTTTTGCTCTTGATATAGCACTGGGAATTGGTGGACTTCCAAAGGGACGTGTTGTGGAAATATATGGTCCAGAGGCTTCTGGGAAAACAACTCTTGCTTTACATGTGATTTCAGAGGCACAGAAGCAAGGAGGCTACTGTGTATTTGTTGATGCTGAGCATGCTCTTGATAAGGCACTTGCAGAATCCATTGGTGTGAATACGGAAAACTTGTTGCTTTCACAACCAGATTGTGGTGAACAAGCACTTAGTCTTGTGGATACGTTAATCCGTAGTGGTTCAGTTGACGTAATTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGGGAGCTTGATGGTGAAATGGGGGATGCACACATGGCAATGCAGGCTAGGTTATCTTGGTCTGTAACTGTAAGGTCAAAGCTTTCTACTTTTGGTGGATTCGGTGGGCCCCAGGAAGTTACTTGTGGTGGCAATGCATTGAAATTCTATGCATCTGTGCGGCTAAATATTAGAAGAATAGGGTTTGTGAAGAAAGGGGAAGAGATTTTGGGAAGCCAGGTACTTGTCAAGGTTGTGAAGAACAAGCTTGCCCCTCCATTTAAAACTGCTGAGTTTGAGCTTCAATTTGGCAAGGGTATAAATAGAGAATGTGAGATCATAGACTTGAGTGTAAAACACAAAATCATCCTAAAGGCCGGTGCTATGTATTACTTCAATGATAAGAATTTCCGTGGCAGGGATGCTTTTAAGAGTTTCCTGGCCGAGAATCATAGTGCATTTGAAGAACTTCAAATGAAACTCAGGGAGAAGCTTCTTGATGATACTGAGGTGGAAAAGGTACAAGATTCAGATGTAGCTAGTGATGTCAAAGAAGAAATTACAACAACACTCGAGTCTACCGATGAAGAATCCTCAGCTGCTGTCGAAGCTTGA 1209 0.4392 MARMLRNASIIKRTLFLPQGFKLGVLGTSQALSFSSKGRRRSKSDGSSDSGEESMSKKELALQQALDQITSSFGKGSIMWLGRSVSPRHVPVVSSGSFALDIALGIGGLPKGRVVEIYGPEASGKTTLALHVISEAQKQGGYCVFVDAEHALDKALAESIGVNTENLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLSWSVTVRSKLSTFGGFGGPQEVTCGGNALKFYASVRLNIRRIGFVKKGEEILGSQVLVKVVKNKLAPPFKTAEFELQFGKGINRECEIIDLSVKHKIILKAGAMYYFNDKNFRGRDAFKSFLAENHSAFEELQMKLREKLLDDTEVEKVQDSDVASDVKEEITTTLESTDEESSAAVEA 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g03367 402 PRINTS RecA protein signature 248 276 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip01g03367 402 PRINTS RecA protein signature 281 310 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip01g03367 402 PRINTS RecA protein signature 334 351 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip01g03367 402 PRINTS RecA protein signature 147 176 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip01g03367 402 PRINTS RecA protein signature 181 210 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip01g03367 402 MobiDBLite consensus disorder prediction 36 57 - -
Aip01g03367 402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 305 IPR027417 -
Aip01g03367 402 MobiDBLite consensus disorder prediction 374 402 - -
Aip01g03367 402 MobiDBLite consensus disorder prediction 38 56 - -
Aip01g03367 402 SUPERFAMILY RecA protein, C-terminal domain 307 362 IPR023400 -
Aip01g03367 402 ProSitePatterns recA signature. 251 259 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Aip01g03367 402 ProSiteProfiles RecA family profile 1. 89 235 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Aip01g03367 402 ProSiteProfiles RecA family profile 2. 239 310 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Aip01g03367 402 MobiDBLite consensus disorder prediction 374 389 - -
Aip01g03367 402 PANTHER RECA 228 392 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip01g03367 402 PANTHER RECA 1 223 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip01g03367 402 SMART AAA_5 111 266 IPR003593 -
Aip01g03367 402 Gene3D - 88 375 IPR027417 -
Aip01g03367 402 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 228 392 - -
Aip01g03367 402 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 223 - -
Aip01g03367 402 Pfam recA bacterial DNA recombination protein 239 306 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip01g03367 402 Pfam recA bacterial DNA recombination protein 61 224 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g03367 Aip-Chr1 136761365 136765186 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g03367 K03553 - gmx:100781271 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03367 01 136761365 136765186 Aip01g03367 01 136761365 136765186 ECH
Aip01g03367 01 136761365 136765186 Aip03g02549 03 44539004 44543741 PCT