Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02438 ATGACAACACTAGTAACTAAGGTCCCTATTGGGTTTCTTTCTCTTCTCTTAATTATTACTATAGCTACCAAAGCTGCGGCTGGTAACTTCTATCAAGACTTTGAAGTAACATGGGGTGATAACCGTGCTAAGATCTTTAACGGTGGCCAGCTTCTTACACTGTCCTTGGACAGAGCCTCCGGCTCCGGATTTCGCTCCAAGAACGAGTATTTGTTTGCCAAACTTGACATGCAAATCAAACTCGTTCCTGGTAACTCCGCTGGCACCGTTACAACATACTATCTATCTTCATTGGGTGGGACACATGATGAAATAGACTTTGAATTTCTGGGGAACTTGAGTGGAGATCCGTACATTCTTCACACAAACGTATTCACGCAAGGGAGAGGGAACAGAGAACAGCAGTTCTATCTATGGTTCGACCCCACCGCCGACTTCCACACCTACTCAATTCTTTGGAATCCTCACAACATCATATTCTCTGTGGACGGCACACCAATAAGGGAGTTCAAGAATTTAGAATCAAGAGGGGTCCCATTCCCAAAGAACCAACCCATGAGACTATACTCAAGCCTTTGGAATGCTGATGACTGGGCCACAAGGGGTGGGCTTGTGAAGACAGATTGGGCCCATGCCCCATTCACTGCCTCATACAGAAACTTCAATGCACCACCAGCCCAATCATGGATGGGCCAGTCTCTTGATTCAACAGGCCTTGCAAGAATCCATTGGGTCCAAAAGAATTACATGATTTACAATTATTGCACTGATCTCAAACGCTTCCCACAAGGGCCTCCTCCTGAATGCTCACTTGCATGA 819 0.4591 MTTLVTKVPIGFLSLLLIITIATKAAAGNFYQDFEVTWGDNRAKIFNGGQLLTLSLDRASGSGFRSKNEYLFAKLDMQIKLVPGNSAGTVTTYYLSSLGGTHDEIDFEFLGNLSGDPYILHTNVFTQGRGNREQQFYLWFDPTADFHTYSILWNPHNIIFSVDGTPIREFKNLESRGVPFPKNQPMRLYSSLWNADDWATRGGLVKTDWAHAPFTASYRNFNAPPAQSWMGQSLDSTGLARIHWVQKNYMIYNYCTDLKRFPQGPPPECSLA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02438 272 PIRSF EndGlu_transf 225 272 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aip03g02438 272 PIRSF EndGlu_transf 1 238 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aip03g02438 272 Pfam Glycosyl hydrolases family 16 31 210 IPR000757 GO:0004553|GO:0005975
Aip03g02438 272 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 226 269 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Aip03g02438 272 ProSitePatterns Glycosyl hydrolases family 16 active sites. 104 114 IPR008263 GO:0004553|GO:0005975
Aip03g02438 272 Gene3D - 16 271 - -
Aip03g02438 272 CDD GH16_XET 25 269 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aip03g02438 272 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 271 IPR013320 -
Aip03g02438 272 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 24 218 IPR000757 GO:0004553|GO:0005975
Aip03g02438 272 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 12 271 - -
Aip03g02438 272 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 12 271 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02438 Aip-Chr3 39903648 39907387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02438 6 272 Glycoside Hydrolase AT4G25810 66.667 3.52e-141 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02438 K14504 K08235 gmx:100778237 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03343 01 136536053 136537619 Aip03g02438 03 39903648 39907387 PCT