LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip01g03343	ATGGGGATTGAGGTACTTATTATTAATAGTGTTCTCCTTATAGGGTTTGCGGTTGCTGCATCCGCAGGTAACTTCAACCAAGACTTTGAAATTACATGGGGTAATGACCGTGCCAAAGTTCTCAACAACGGACAGCTTCTGACGCTGTCCCTTGACAAGGCCTCCGGCTCCGGCTTCCGTTCCCGGAACGAGTACCTGTTTGGAAAGATCGACATGCAGCTTAAACTTGTTCCTGGTAATTCAGCAGGCACAGTCACAGCCTATTATCTAAGTTCACTTGGTGACACTCACGATGAGATAGACTTTGAATTTCTGGGGAACTTGAGTGGTGAACCATACACTCTGCACACGAATGTATTCACGCAAGGGAAAGGCAACAGAGAACAACAGTTCCATCTATGGTTCGACCCCACCAAGGACTTCCATACTTATTCTCTTCTTTGGAATCCTCAAAGCATCATATTCTCTGTGGACGGCACACCAATAAGGGAGTTCAAGAATTGGGAATCAAAAGGAGTTCCATTTCCTAAGAATCAAGCAATGAGGATATACTCAAGTCTATGGGACGCAGAAGATTGGGCCACAAGGGGTGGGCTTGTGAAGACTGATTGGACCCAAGCCCCATTCACAGCCTCATACAAAGGCTTCAATGCACAAGCTTGTGTTTGGAGCTCTTCTTCAGGCTCCTCTTGTTCTTCAAAACAAGGCCAATCATGGTTCACTCAGTCACTTGACTCAACTGGGCAAGCAAGAATCCAGTGGGTTCAGAAGAACTACATGATCTACAATTACTGCACTGATACCAAACGATTCCCACAAGGCCTTCCTCCTGAATGCACCCTTGCATGA	849	0.4617	MGIEVLIINSVLLIGFAVAASAGNFNQDFEITWGNDRAKVLNNGQLLTLSLDKASGSGFRSRNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGDTHDEIDFEFLGNLSGEPYTLHTNVFTQGKGNREQQFHLWFDPTKDFHTYSLLWNPQSIIFSVDGTPIREFKNWESKGVPFPKNQAMRIYSSLWDAEDWATRGGLVKTDWTQAPFTASYKGFNAQACVWSSSSGSSCSSKQGQSWFTQSLDSTGQARIQWVQKNYMIYNYCTDTKRFPQGLPPECTLA	282

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip01g03343	282	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	4	281	IPR044791	GO:0004553
	Aip01g03343	282	SUPERFAMILY	Concanavalin A-like lectins/glucanases	24	281	IPR013320	-
	Aip01g03343	282	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	19	213	IPR000757	GO:0004553\|GO:0005975
	Aip01g03343	282	Pfam	Glycosyl hydrolases family 16	26	205	IPR000757	GO:0004553\|GO:0005975
	Aip01g03343	282	PRINTS	Glycosyl hydrolase family 16 signature	57	75	IPR008264	GO:0004553\|GO:0005975
	Aip01g03343	282	PRINTS	Glycosyl hydrolase family 16 signature	115	128	IPR008264	GO:0004553\|GO:0005975
	Aip01g03343	282	PRINTS	Glycosyl hydrolase family 16 signature	133	150	IPR008264	GO:0004553\|GO:0005975
	Aip01g03343	282	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	4	281	-	-
	Aip01g03343	282	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	99	109	IPR008263	GO:0004553\|GO:0005975
	Aip01g03343	282	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	236	279	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Aip01g03343	282	CDD	GH16_XET	20	279	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Aip01g03343	282	PIRSF	EndGlu_transf	1	282	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Aip01g03343	282	Gene3D	-	11	281	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip01g03343	Aip-Chr1	136536053	136537619	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip01g03343	3	282	Glycoside Hydrolase	AT4G25810	72.183	1.37e-152	426

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip01g03343	K14504		-	gmx:100807063	498.049

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip01g03343	01	136536053	136537619	Aip03g02438	03	39903648	39907387	PCT