Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02407 ATGTACGAACACACACATAATCATCTGGTTCATCATCAGCAACCAGTAACGATGACTATGGATACCATGAAGATGGATATGATAAGAAGGAATAAGAGGGAGAGGAACAAAGAATCCAACAACAACAACAACAACAACGAAGACAACAACAATAAGCTTCGCACCGTTGACTTGAGTTGCATGTCGTTGGAGTCTCTCCCTATTCCTTCTCTTGATTTAGCTACCATTTCCAAGTTGGACCTTTCCAACAACAATCTCCAGAATATTCCGGAGTCGTTAACGGCGAGACTACTGAACTTGACGGTGTTGGACGTGCACTCGAACCAGCTAAGAGCCTTAGAAGAACTGAATGCTAACTTCAACAAGTTAAGCAAGTTGCCGGATACAATAGGGTTTGAGCTCATAAACCTCCAGAAGCTGTCCGTCAACTCCAACCAGCTTGTGTTCCTTCCAAGCTCCACCTCTCACCTTATGGCCCTCAAGGTCCTCGACGCGCGCCTTAACTGCTTAAGGTCTCTGCCCGAAGACCTTGAGAACCTAGTCAACCTTGAGACGCTCAATGTGAGCCAGAACTTCCGGTACTTGGACACACTACCCTACTCCATAGGGCTTCTATTGTCCCTCACTGAGCTTGATGTTAGCTACAACAACATCAAGACTTTGCCCAATTCCATTGGGTGCCTCCAGAAGCTCCAGAAGTTGTGTGTCGATGGGAACCCGCTTGCTTCGCCGCCATTGGAGGTGGTTGAGCAAGGGTTAAATGTGGTGAAGGAGTTCTTGTGTCATAAGATGAACTCGTCAGGGGACCAGAGTAGCAAAAAGAAGAAGTCGTGGGTGAAGAATTTCGTCAAGTGTGGAACATTCCAAGGACGCATCAATAGTGGTATGAAACGGCCGCAACATGACGGTTTCACCAAGCTTAAGCATCAGTCCATCGATGGTCTCGCCTCGCCTGGCGGCTTCATGGGGATGCTCTCACCTCTTCGCATCTTCTCACCTCGTCGTTCCTTTAGTTGA 1017 0.4769 MYEHTHNHLVHHQQPVTMTMDTMKMDMIRRNKRERNKESNNNNNNNEDNNNKLRTVDLSCMSLESLPIPSLDLATISKLDLSNNNLQNIPESLTARLLNLTVLDVHSNQLRALEELNANFNKLSKLPDTIGFELINLQKLSVNSNQLVFLPSSTSHLMALKVLDARLNCLRSLPEDLENLVNLETLNVSQNFRYLDTLPYSIGLLLSLTELDVSYNNIKTLPNSIGCLQKLQKLCVDGNPLASPPLEVVEQGLNVVKEFLCHKMNSSGDQSSKKKKSWVKNFVKCGTFQGRINSGMKRPQHDGFTKLKHQSIDGLASPGGFMGMLSPLRIFSPRRSFS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02407 338 Coils Coil 29 49 - -
Aip03g02407 338 ProSiteProfiles Leucine-rich repeat profile. 75 96 IPR001611 GO:0005515
Aip03g02407 338 SUPERFAMILY L domain-like 39 263 - -
Aip03g02407 338 ProSiteProfiles Leucine-rich repeat profile. 207 228 IPR001611 GO:0005515
Aip03g02407 338 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 113 - -
Aip03g02407 338 SMART LRR_typ_2 73 96 IPR003591 -
Aip03g02407 338 SMART LRR_typ_2 205 228 IPR003591 -
Aip03g02407 338 SMART LRR_typ_2 157 180 IPR003591 -
Aip03g02407 338 SMART LRR_typ_2 110 133 IPR003591 -
Aip03g02407 338 SMART LRR_typ_2 134 156 IPR003591 -
Aip03g02407 338 PANTHER LEUCINE-RICH REPEAT-CONTAINING 111 324 - -
Aip03g02407 338 SMART LRR_bac_2 110 129 - -
Aip03g02407 338 SMART LRR_bac_2 228 246 - -
Aip03g02407 338 SMART LRR_bac_2 205 224 - -
Aip03g02407 338 SMART LRR_bac_2 180 201 - -
Aip03g02407 338 SMART LRR_bac_2 134 153 - -
Aip03g02407 338 SMART LRR_bac_2 73 92 - -
Aip03g02407 338 SMART LRR_bac_2 157 176 - -
Aip03g02407 338 PANTHER LEUCINE-RICH REPEAT-CONTAINING 1 113 - -
Aip03g02407 338 Coils Coil 103 123 - -
Aip03g02407 338 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 111 324 - -
Aip03g02407 338 Gene3D Ribonuclease Inhibitor 1 276 IPR032675 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02407 134 245 Miscellaneous Gene Families AT4G39270 34.711 9.92e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02407 - - lja:Lj6g3v1315120.1 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g02407 03 38984479 38986774 Aip03g02407 03 38984479 38986774 ECH
Aip01g03335 01 136465627 136467572 Aip03g02407 03 38984479 38986774 PCT