Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01549 ATGGGTTCTCCTCCTTCAAACCATGTCTATGATGTTGATGAACCTTTGCTAACACCTTCAACACCACCACAACCTCTGCAAAATTTATCATTTAGTTCGAAGCACGATGAATCATCAAATACTGGTGAACTTGAGAGGATACTGTCAGACACAAGTGTTCCTCTTTCAAAGAGAGTTGGAGCAGCAACATGGATTGAGTTAAAGTTACTATTTTACCTTGCTGCCCCTGCAGTTATAGTGTATCTCATTAACTATGTTATGTCCATGTCCACACAAATATTCTCTGGTCATCTTGGTAATCTTGAGCTTGCTGCTGCTTCCCTTGGAAACACTGGCATCCAAGTCTTTGCCTACGGCCTCATGTTGGGGATGGGTAGTGCTGTAGAGACATTATGTGGACAAGCATACGGGGCACAAAAATTCGAAATGCTTGGAGTATATCTACAAAGATCAACAATCCTTTTATCAATAGCAGGTATAGTCCTAACATTCATCTACATATTCTCGGAGCCCATTTTGGTCTTTTTAGGAGAATCCCCAAGAATCGCATCGGCAGCAGCACTTTTCGTGTACGGCCTAATCCCACAAATATTTGCGTACGCCGTAAACTTCCCAATCCAGAAGTTTCTACAGGCACAAAGCATAGTGGCACCGAGCGCGTACATCTCAACCGCGACGTTGGCGATTCACGTGCTGTTGAGTTGGTTGGTGGTGTACAAGGTGGGGTTGGGTTTGTTAGGAGCGTCGTTGGTGTTGAGCTTTTCGTGGTGGGTGATAGTGGTGGCGCAGTTTGTGTACATTGTGAAGAGTGAGAGGTGTAAGGACACGTGGCGGGGGTTTAGCGTTCAAGCGTTTTCCGGGCTGCCGGAGTTTTTTAAGCTGTCTGCTGCTTCGGCTGTGATGCTGTGTCTTGAGACGTGGTACTTTCAGATTCTTGTTCTGCTTGCTGGCTTGTTGCCTCACCCTGAGTTGGCCCTTGATTCACTTTCTATTTGTACCACGGTGTCTGGATGGGTGTTCATGATCTCAGTAGGATTTAACGCTGCTGCAAGTGTGAGAGTGAGCAACGAGCTAGGAGCTAGGAATCCAAGATCAGCATCATTCTCAGTGGTGGTAGTGACAGTGATATCATTCGTGTTATCAGTGATAATAGCAATAGTGGTTCTATTATTGAGGGATGTCATAAGCTATGTCTTCACCGAAGGAGAAGAGGTTGCTGCTGCTGTCTCTGATCTCTGCCCTCTCCTCGCTCTTTCCATTGTCCTCAACGGCATTCAGCCCGTCTTATCCGGGGTGGCCGTTGGATGTGGATGGCAAACTTTCGTTGCATATGTAAACGTTGGTTGCTACTATGGAGTTGGCATACCATTGGGCTCGGTTCTTGGTTTCTATTTTAAGCTCAGTGCCAAGGTTGAAGAAGCATCAAAGAGGTTGAATAAGTGGGACGAAAATAAGGAGCCACTTCTGAAGAACTGA 1476 0.46 MGSPPSNHVYDVDEPLLTPSTPPQPLQNLSFSSKHDESSNTGELERILSDTSVPLSKRVGAATWIELKLLFYLAAPAVIVYLINYVMSMSTQIFSGHLGNLELAAASLGNTGIQVFAYGLMLGMGSAVETLCGQAYGAQKFEMLGVYLQRSTILLSIAGIVLTFIYIFSEPILVFLGESPRIASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVAPSAYISTATLAIHVLLSWLVVYKVGLGLLGASLVLSFSWWVIVVAQFVYIVKSERCKDTWRGFSVQAFSGLPEFFKLSAASAVMLCLETWYFQILVLLAGLLPHPELALDSLSICTTVSGWVFMISVGFNAAASVRVSNELGARNPRSASFSVVVVTVISFVLSVIIAIVVLLLRDVISYVFTEGEEVAAAVSDLCPLLALSIVLNGIQPVLSGVAVGCGWQTFVAYVNVGCYYGVGIPLGSVLGFYFKLSAKVEEASKRLNKWDENKEPLLKN 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01549 491 Pfam MatE 76 236 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Aip03g01549 491 Pfam MatE 298 458 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Aip03g01549 491 MobiDBLite consensus disorder prediction 23 37 - -
Aip03g01549 491 PANTHER MULTIDRUG RESISTANCE PROTEIN 25 470 - -
Aip03g01549 491 PANTHER PROTEIN DETOXIFICATION 25 470 - -
Aip03g01549 491 MobiDBLite consensus disorder prediction 1 43 - -
Aip03g01549 491 CDD MATE_eukaryotic 66 467 IPR045069 GO:0042910|GO:1990961
Aip03g01549 491 TIGRFAM matE: MATE efflux family protein 76 470 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01549 Aip-Chr3 17341840 17347517 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01549 K03327 - gmx:100801718 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01549 03 17341840 17347517 Aip03g01549 03 17341840 17347517 ECH
Aip08g00759 08 7722614 7727021 Aip03g01549 03 17341840 17347517 PCT