Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01544 ATGTATAAATCCACCTCTTCCCTTCTCAGGGCTACAAGGTCCAAACTCTCTTCTTCTTCTAAAACGTTCGCTTATTCTCATTCTCGCACCTCTCCTTCGGTAACCGCCAACGCTGCGTCTTCTTCACGCGCTTTTACCTCCTCCGCCGCGCGTGCTTTCACCCGCTGGAGCCACCGCCTCGACTTCAGTTCTCCGATCAGCCTCCGCGCTCACGCCAGAGCCCTCGCTCCTCTTCTCCAACGTTTCCAACGCAGCTTGGCTTCCATGGCCAGTGAAAATCCATTCAAGGGAAACCTGACAAGTCTCCCCAAGCCTGGAGGTGGCGAGTTTGGAAAATTCTATAGCCTTCCTTCTCTCAATGATCCAAGAGTTGACAAGTTGCCGTATTCTATCAGAATTCTCCTTGAATCTGCCATTCGTAATTGTGACAATTTCCAAGTCAAGAAAGAGGATGTTGAGAAGATTATTGACTGGGAAAACACTTCCCCAAAGCAAGTTGAAATTCCTTTCAAGCCTGCGCGGGTCCTCTTGCAGGATTTTACTGGAGTCCCGGCTGTTGTTGACCTAGCTTGCATGCGTGATGCAATGAACAAGCTTGGCAGTGATTCTAATAAGATTAATCCTCTGGTTCCAGTTGATCTAGTCATTGATCATTCAGTTCAAGTTGATGTTGCAAGGTCAGAAAATGCAGTGCAGGCCAATATGGAGCTTGAATTCCAGAGAAACAAGGAGAGATTTGCTTTTCTAAAATGGGGGTCAACTGCATTCCGTAACATGCTCGTTGTTCCTCCTGGTTCTGGTATAGTACATCAGGTCAATCTTGAATATCTTGGACGGGTTGTTTTCAACAATGAAGGCATACTCTATCCTGACAGTGTGGTTGGGACTGATTCACATACAACTATGATAGATGGGCTTGGTGTTGCTGGATGGGGTGTTGGAGGTATTGAAGCTGAAGCAGCAATGCTTGGCCAGCCGATGAGTATGGTGTTGCCTGGTGTTGTTGGCTTCAAGTTGTCTGGAAAACTGCGCAATGGTGTTACAGCAACTGACTTGGTTCTAACTGTGACACAAATGCTTAGAAAGCATGGTGTTGTTGGAAAATTTGTTGAATTTTATGGTGATGGTATGGGTGAATTATCACTAGCAGATAGGGCCACTATTGCTAATATGTCTCCTGAATATGGTGCTACCATGGGTTTCTTCCCTGTGGATCATGTTACACTACAATATCTCAAGTTAACTGGTCGAAGTGATGAGACTGTGGCCATGATAGAGTCTTATCTCAGGGCAAACAACATGTTCGTTGACTATAATGAGCCACAACAAGACAGAGTTTATTCCTCGTATCTTGAATTAAACCTTTCAGATGTTGAACCATGTATCTCCGGACCAAAGAGACCTCATGATCGGGTGCCTTTGAAAGACATGAAAGCTGACTGGAAGTCTTGTCTTGATAACAAAGTTGGGTTTAAGGGATTTGCTATACCGAAAGAAGCACAAGGAAAAGTTGCAAAGTTTAATTTCCATGGGCAGCCAGCAGAGCTCAGGCATGGCAGTGTTGTGATTGCTGCAATCACAAGCTGTACTAATACATCAAACCCAAGTGTTATGCTAGGAGCTGGTCTTGTTGCGAAAAAGGCCCATGAGCTTGGTCTGAAGGTCAAGCCTTGGGTTAAAACTAGTCTTGCTCCAGGCTCAGGAGTTGTTACAAAATACCTTCTCCAGAGTGGACTGCAGAAACCTCTAAACGAACAAGGTTTTCATATAGTTGGATTTGGCTGTACTACATGTATTGGCAATTCAGGGGACCTGGATGAATCTGTTGCATCTGCCATCTCAGAAAATGACATTGTAGCAGCAGCTGTGTTGTCTGGGAACCGTAATTTTGAGGGCCGTGTGCATCCCTTGACTAGGGCTAACTACCTTGCCTCACCTCCTTTGGTTGTTGCTTATGCTCTTGCTGGCACGGTAGACATTGACTTTGAGAAAGAGCCAATTGGAAAAGGCAAGGACGGCAAGGATGTGTACTTGAGGGATATCTGGCCATCTACTGAAGAAATTGCTCAGGCCGTGCAATCTAGTGTGTTGCCTGACATGTTCCGAAGTACATATGAGTCCATTACCAAGGGCAATCCTATGTGGAATCAACTACAAGTTTCTACCGACAAACTTTACTCATGGGACCCCAGCTCAACATATATTCATGAACCTCCATACTTCAAGAACATGACCATGGAATCTCCGGGAGCTCATGGTGTCAAAGAGGCCTATTGCTTGCTGAATTTTGGGGACAGTATAACCACTGATCACATTTCTCCAGCTGGAAGCATTCACAAGGAAAGTCCTGCTGCTAAATACCTTATGGAGCGTGGGGTGGACCGCAAGGACTTCAACTCTTATGGAAGTCGCCGAGGGAATGATGAGATAATGGCAAGGGGAACTTTTGCCAACATTCGTCTTGTTAACAAGCTCTTGAATGGGGAAGTTGGCCCCAAGACAGTTCACATTCCTACCGGGGAAAAGCTATATGTGTTTGATGCGGCAATGAGATACAGAAATGCCGGGCAAGACACCATTGTGCTGGCTGGAGCTGAATATGGTAGTGGAAGTTCTAGGGATTGGGCAGCCAAGGGTCCAATGCTATTGGGTGTCAAAGCTGTGATAGCTAAAAGTTTTGAGAGAATTCATCGCAGCAATTTGGTAGGGATGGGTATTATTCCTCTTTGCTTCAAATCCGGTCAGGATGCGGAAACTTTGGGATTGACTGGTCATGAACGGTATACAATTGACCTTCCAAGTAAAATTAGCGAGATTAGGCCTGGCCAAGATGTCACTGTTACAACCGATAATGGAAAATCATTCACCTGCACAGTACGCTTTGACACCGAGGTGGAACTAGCTTACTTCGACAATGGAGGCATTCTTCCATACGTGATAAGGAATCTCATCAAGCAGTGA 2961 0.4556 MYKSTSSLLRATRSKLSSSSKTFAYSHSRTSPSVTANAASSSRAFTSSAARAFTRWSHRLDFSSPISLRAHARALAPLLQRFQRSLASMASENPFKGNLTSLPKPGGGEFGKFYSLPSLNDPRVDKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENTSPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSTAFRNMLVVPPGSGIVHQVNLEYLGRVVFNNEGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFYGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIESYLRANNMFVDYNEPQQDRVYSSYLELNLSDVEPCISGPKRPHDRVPLKDMKADWKSCLDNKVGFKGFAIPKEAQGKVAKFNFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHELGLKVKPWVKTSLAPGSGVVTKYLLQSGLQKPLNEQGFHIVGFGCTTCIGNSGDLDESVASAISENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGKGKDGKDVYLRDIWPSTEEIAQAVQSSVLPDMFRSTYESITKGNPMWNQLQVSTDKLYSWDPSSTYIHEPPYFKNMTMESPGAHGVKEAYCLLNFGDSITTDHISPAGSIHKESPAAKYLMERGVDRKDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTVHIPTGEKLYVFDAAMRYRNAGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGQDAETLGLTGHERYTIDLPSKISEIRPGQDVTVTTDNGKSFTCTVRFDTEVELAYFDNGGILPYVIRNLIKQ 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01544 986 Gene3D - 685 746 - -
Aip03g01544 986 SUPERFAMILY LeuD/IlvD-like 725 984 - -
Aip03g01544 986 SUPERFAMILY Aconitase iron-sulfur domain 107 720 IPR036008 -
Aip03g01544 986 TIGRFAM aconitase_1: aconitate hydratase 1 111 984 IPR006249 -
Aip03g01544 986 Pfam Aconitase family (aconitate hydratase) 153 656 IPR001030 -
Aip03g01544 986 PANTHER ACONITATE HYDRATASE 54 986 - -
Aip03g01544 986 CDD AcnA_IRP_Swivel 762 932 IPR044137 -
Aip03g01544 986 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 54 986 IPR006249 -
Aip03g01544 986 ProSitePatterns Aconitase family signature 2. 587 600 IPR018136 -
Aip03g01544 986 Gene3D Aconitase, domain 3 92 460 IPR015931 -
Aip03g01544 986 Gene3D Aconitase, domain 3 461 684 IPR015931 -
Aip03g01544 986 CDD AcnA_IRP 174 658 - -
Aip03g01544 986 Gene3D Aconitase, domain 4 749 985 IPR015928 -
Aip03g01544 986 PRINTS Aconitase family signature 235 248 IPR001030 -
Aip03g01544 986 PRINTS Aconitase family signature 259 267 IPR001030 -
Aip03g01544 986 PRINTS Aconitase family signature 288 301 IPR001030 -
Aip03g01544 986 PRINTS Aconitase family signature 302 317 IPR001030 -
Aip03g01544 986 PRINTS Aconitase family signature 364 377 IPR001030 -
Aip03g01544 986 PRINTS Aconitase family signature 378 391 IPR001030 -
Aip03g01544 986 PRINTS Aconitase family signature 460 474 IPR001030 -
Aip03g01544 986 PRINTS Aconitase family signature 525 536 IPR001030 -
Aip03g01544 986 PRINTS Aconitase family signature 587 600 IPR001030 -
Aip03g01544 986 Pfam Aconitase C-terminal domain 785 912 IPR000573 -
Aip03g01544 986 ProSitePatterns Aconitase family signature 1. 521 537 IPR018136 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01544 Aip-Chr3 17229164 17238223 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01544 K01681 - gmx:100793264 1746.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01544 03 17229164 17238223 Aip03g01544 03 17229164 17238223 ECH
Aip08g00757 08 7678671 7686398 Aip03g01544 03 17229164 17238223 PCT