Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00597 ATGAAGAGGATGAAGGAGGAGGCTTCTGTTGTTCTCTTATTGCTTACTTTCTCACTTGTTGTGTGTTGTTGCTATGCACAGACAAAAGAGTGCACAAACATTCCAACACAATCACACTCCTTCCGCTATGAACTCTTAACTTCCAAGAATGAAACTTGGAAGAAAGAAGTGATGTCTCATTTCCATTTGACACCAACAGATGATTCAGCATGGGCTGATTTGCTTCCAAGGAGGTTCCTATCACAGAGGGACCAACATGATTGGGCATTCATGTACAGGAAAATCAAGAACCTTGGTGTGTTTAAGGACTCTCCTGAGGCTGCAGGGTTCCTCAAAGAGGTGCCTTTGCAGGATGTGAGGCTGCCGTTGGATTCAATCCATGGCAGGGCACAGAACACCAACTTGGAGTATCTCTTGATGTTGGATGTTGACAGGTTGCTTTGGAGTTTCAGGAAGACAGCTGGTCTTGATACTCCTGGGACACCTTATGGAGGATGGGAAGGTTCCAATGTTGAGCTCAGGGGTCATTTTGTTGGGCATTACTTAAGTGCATCAGCTCTAATGTGGGCGAGCACACAGAATGATAAATTGAAGGATAAAATGTCAGCCGTTGTCGCCGGTCTCTCTGCCTGTCAGCAGAAAATTGGAACTGGATATCTCTCTGCATTTCCATCTGAGTTTTTTGACAGATTTGAAGCTATTCAGCCTGTGTGGGCTCCCTATTACACCATTCACAAGATATTGGCCGGCCTGTTGGATCAACATACTTTTGCTGGAAATCCTCAAGCTCTAAAAGTTGTGACATGGATGGTTGATTACTTTTACAACCGAGTGTTGAATGTAATAACAAAGAACACTATAAGTAGGCACTATGAATCACTGAATGAGGAAACTGGGGGAATGAATGATGTCCTTTACAGATTATACACGTTAACGGCAGATCCAAAGCATTTAATGTTGGCTCACCTTTTTGACAAGCCATGTTTTTTAGGGTTGCTTGCTGTACAGGCTAATGACATAACTAATTTTCATGCTAATACACATATCCCCGTTGTTATTGGAGCTCAAATGCGGCATGAAGTCACTGGTGATCCACTTTATAAGGATATTGGGACATTCTTTATGGACATTATTAACTCTTCTCACAGCTATGCTACTGGAGGAACATCAGTGTCGGAGTTCTGGCATAATCCAAAGAGAATAGCAGACAACTTAAAAACAACAGAAACTGAAGAATCATGCACAACTTACAACATGTTGAAGGTTTCTCGCCACCTGTTTAGATGGACCAAGGAGGTTTCTTATGCAGATTATTATGAACGCGCCTTGACGAATGGTGTACTTAGCATTCAAAGGGGAACAGATCCTGGAGTGATGATTTATATGCTTCCCCTAGCCAGAGGGGTTTCCAAGGCCAAAACTGGACATGGCTGGGGAACACAGTTTGATTCTTTCTGGTGCTGCTATGGAACAGGAATTGAGTCATTCTCAAAGCTTGGAGATTCTATCTATTTTGAAGAGCAGGCGAATGAACCTACTCTTTATATCATTCAGTATATATCAAGCTCCTTTAATTGGAAATCTGGGGAAATTGAGATCAATCAAACCGTAGATCCAGTTGTTTCATGGGATCCTTACCTAAGAGTCACATTTACATTTTCTCCTAACGAGAAAACCGGGAGTACGTTGAAATTTCGCATACCATCTTGGACTAGTTTGGATGGTGCCAAAGCAACATTGAACGATGCAACTTTATCTCTACCAAGTCCTGGAAATTTTTTGTCAGTAAGCCGACAGTGGAGTGCAGGTGACAAACTGAAGCTTCAGTTGCCTATTACCATCAGAACAGAGGCCATAAAAGATGACAGGCCTGAATATGCATCTGTTCAAGCAATTCTTTATGGACCATATCTCCTTGCCGGCCATACAACCGGTGATTGGGACATTAACTCCAGCGGTAAAACAACTTCTGGAGATTGGATTACCCCAGTTTCTGCCAGCTACAATAGTCAACTATTCACTTTGTACCAAGGCTTTGCAAACTCAACTTATGCCTTAACAAACACAAACCAATCATCACTTACAATGGAATCATTACCTACATCTACACCAGACCCTGATTCTGCCATTGACAAAACATTTAGGCTAGTCCCAAAAGATCCTTCCACAAAGTTCTCTACATGGAAGGATCTTATTGGCAAATCCGTGACGATAGAACTATTTAATCCCCCTGGCATGTATGTGATTCACCAAGGACCAAACCAACCTCTTATTATTGATCAATCCAAAAGTGCGGCATCTTCTTCCTTTATCGTGGTACAAGGCTTGGATGGACAAAAGGAAACGGTATCTTTGAAATCTGAAAGCGATGATGGTTGCTTTGTTACCACTGATGGAGGAGTGAAGCTTAGTTGCAGTGGCTCTGGAGATGATTTTAACCAAGCAGCAAGCTTTGTTATAGAAGAAGGAATAAGGAAATATAATCCTATTAGCTTTGTGGCTAAGGGTGCAAACAGGGATTTTCTCTTGGAGCCATTGTTCACATTCAAAGATTTGCCTTATACTGTTTATTTCAACATTCAAAGTTGA 2589 0.4187 MKRMKEEASVVLLLLTFSLVVCCCYAQTKECTNIPTQSHSFRYELLTSKNETWKKEVMSHFHLTPTDDSAWADLLPRRFLSQRDQHDWAFMYRKIKNLGVFKDSPEAAGFLKEVPLQDVRLPLDSIHGRAQNTNLEYLLMLDVDRLLWSFRKTAGLDTPGTPYGGWEGSNVELRGHFVGHYLSASALMWASTQNDKLKDKMSAVVAGLSACQQKIGTGYLSAFPSEFFDRFEAIQPVWAPYYTIHKILAGLLDQHTFAGNPQALKVVTWMVDYFYNRVLNVITKNTISRHYESLNEETGGMNDVLYRLYTLTADPKHLMLAHLFDKPCFLGLLAVQANDITNFHANTHIPVVIGAQMRHEVTGDPLYKDIGTFFMDIINSSHSYATGGTSVSEFWHNPKRIADNLKTTETEESCTTYNMLKVSRHLFRWTKEVSYADYYERALTNGVLSIQRGTDPGVMIYMLPLARGVSKAKTGHGWGTQFDSFWCCYGTGIESFSKLGDSIYFEEQANEPTLYIIQYISSSFNWKSGEIEINQTVDPVVSWDPYLRVTFTFSPNEKTGSTLKFRIPSWTSLDGAKATLNDATLSLPSPGNFLSVSRQWSAGDKLKLQLPITIRTEAIKDDRPEYASVQAILYGPYLLAGHTTGDWDINSSGKTTSGDWITPVSASYNSQLFTLYQGFANSTYALTNTNQSSLTMESLPTSTPDPDSAIDKTFRLVPKDPSTKFSTWKDLIGKSVTIELFNPPGMYVIHQGPNQPLIIDQSKSAASSSFIVVQGLDGQKETVSLKSESDDGCFVTTDGGVKLSCSGSGDDFNQAASFVIEEGIRKYNPISFVAKGANRDFLLEPLFTFKDLPYTVYFNIQS 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00597 862 PANTHER PROLINE-TRNA LIGASE (DUF1680) 12 862 - -
Aip03g00597 862 Pfam Beta-L-arabinofuranosidase, GH127 119 640 IPR012878 -
Aip03g00597 862 Gene3D - 731 848 - -
Aip03g00597 862 SUPERFAMILY AbfB domain 765 842 IPR036195 GO:0046373|GO:0046556
Aip03g00597 862 PANTHER - 12 862 - -
Aip03g00597 862 SUPERFAMILY Six-hairpin glycosidases 175 451 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00597 Aip-Chr3 5837061 5842652 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00597 K09955 - gmx:100781521 1303.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00597 03 5837061 5842652 Aip03g00597 03 5837061 5842652 ECH
Aip08g00353 08 2660099 2664178 Aip03g00597 03 5837061 5842652 PCT